G105326


Basic Information

Item Value
gene id G105326
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15535370 ~ 15569124 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131742
tgtttttaagaaaggAAACATGATAACACCTTTTATtcacactttacaaaaaaagaaaagaaaaaaaaataagtctaCTACAATACTATCAGCATTTCAAATGTACTCATCTTTAACTGGACATTTGCCATTTGCTTaaacagaaagggaaaaagaCGGACAGAGAAAGAGCAGGTCACAGACAAGGCCCAGACAAGGACCACAGATccaatgtttttgtaaaaattgttaaaatccaaagtttttcacatttgcttttttaaagattaagaTTAATTTTAAGGTGTAGCTGCACTTTCAATCTACATTAAGTGCttgtcaattgttttatttttgtcgtcaactttaagaaataaaatcttTAGTGCAGTGTACCacaactgcaaattacaaatttaatGTCAAATGGTGACTTACAGAACCGCCATACCCTGTATGGTTCCCTGCCAGCAGATGAAACGCAACAAGCTAGACCGGGTTATACTTCTGGCTCGTGTGACATACTAGATAGATTAAACTTAGTACGAAAAAACTcccctttttttaaaaacagctcTAACAAAAagtataacaataattaaaggtAGATCTTTACACTTGGCTTTATGGTAATATGCAACAGATGGCACTATACACAAATAGGTTAAGCTATAGCACAGGTCTAGCTCTACAGAACAGCATGGTTCGGTCCcaatttcattataaaaaatagttttgcaaTGGCCTGGGGTTTTCTGTGTCTGACATTTTGCtctttattctgtttaaaaacGAAGTTAAAAATAGGATGCTTCTTAAACACCAGACCAAAAGTTTCTGAAGGTATCACATGATAGCATACCTTggtgtaaaaatacaaaaaaaaaaaaaaaaaattatatatataaaaaaaatcaagaacaaaacaaaaaaaaaaaacagaagatccAAGCACTGTGCAAAGAGACAAACAGTTCTAAGGTTCAGCAGCtataaaatttacattttccataCTTAACCTGATCACTATGGAATTCATTACTCCATGAgaagaaaggaacaaaaaaaaaaaaaagtcacagctaataccccaaaaaaaagaaggaatcataaaatctttacaaatgttaacagtatttaaaaaattgaaaagacaTTGTACAGGTTTCCCCAGCTTGCACGGGCAGTGCTGTTTGAGAACAGAACTAGTGAGGCACACGTCTTTTGAAATGGGGGAATTCTTACATTTTCCTACCCATTGTGCACTGCCAATCAGTTGCAAAGAAATTAAGAGCTTTCCATTTCCCCTTCGGTTCAACAGACCTGCCCTCAAAGGGTTCAAAATGTCACATTAGATTAGCAGAGAAAACCTgtcaatgtctttttttcttctttttacaaGCTggtcttatatatttttttaataacattaacatgtGCAACGGATAAAAATTTAGCCTTAGTTAACAATacaatcattttttccaaatcagttttttttttttttttttttttaagtacaaaaATGCCATAAATCAGGTCTTTTGTGGTTCATATACAATCATTTAAAGGCTAAATTCAATTTCTATTATACAAACACTTCTCTGAAAAAAACCTTGGAGTGAAGTATGGAAAAATGGCCTTAGAACGTTACTACTGGCCTCAGACAGTGCTACAGATCCCTGTGAACGCAAATGCCTAGACAAGTGTACGAGTGAGCAGACATGCCATGCAGGTGAGCATCAAAACAGTTGCTTTCTTTCAATCTGTTAAAAATATGCTATTGGGTCATTTATTATTGCCTCAGTTTTATTGGATATACCTAGTTTTTAACTGAAATCTTAAATATCTTAAAGTGGTTTTCGTCCTGTATGCTAGTAGTTCTTTGTGTTTGGGTGCAGGTGGTTTGGAGGGGTTGCTGTAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131742 True 1905 lncRNA 0.34 3 15535370 15569124

Neighbor

gene id symbol gene type direction distance location
AMCG00011248 NA coding downstream 91245 15443190 ~ 15444125 (-)
AMCG00011244 NA coding downstream 170480 15361316 ~ 15364890 (-)
AMCG00011246 NA coding downstream 188406 15328336 ~ 15346964 (-)
AMCG00011245 NA coding downstream 239865 15282577 ~ 15295505 (-)
AMCG00011237 sept8,LOC103475354 coding downstream 262742 15247192 ~ 15272628 (-)
AMCG00011261 NA coding upstream 233349 15802473 ~ 15937457 (-)
AMCG00011260 NA coding upstream 405907 15975031 ~ 15977007 (-)
AMCG00011263 cssa04h5orf24 coding upstream 409573 15978697 ~ 15985898 (-)
AMCG00011265 ddx46,LOC107757870,LOC107571605,LOC107713612 coding upstream 417954 15987078 ~ 16000017 (-)
AMCG00011266 NA coding upstream 431020 16000144 ~ 16004390 (-)
G105282 NA non-coding downstream 131137 15385716 ~ 15404233 (-)
G105298 NA non-coding downstream 138978 15391732 ~ 15396392 (-)
G105291 NA non-coding downstream 160607 15373347 ~ 15374763 (-)
G105261 NA non-coding downstream 212658 15298645 ~ 15322712 (-)
G105249 NA non-coding downstream 234519 15233703 ~ 15300851 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding upstream 463127 16032251 ~ 16035023 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding upstream 569975 16139099 ~ 16141338 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding upstream 667004 16236128 ~ 16237685 (-)
G105479 NA non-coding upstream 675572 16244696 ~ 16247301 (-)
G105553 NA non-coding upstream 1086123 16655247 ~ 16725153 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 19695 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 162191 15370402 ~ 15373179 (-)
G105050 NA other downstream 1466809 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 1538781 13993983 ~ 13996589 (-)
G104929 NA other downstream 1856108 13665795 ~ 13679262 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 394214 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 474247 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 1374808 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 2148502 17717626 ~ 17751099 (-)
G105770 NA other upstream 2182129 17751253 ~ 17751502 (-)

Expression


Co-expression Network