G105427 (sar1b,LOC106940938,LOC107657201)


Basic Information

Item Value
gene id G105427
gene name sar1b,LOC106940938,LOC107657201
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16032251 ~ 16035023 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131866
gTGTCACCACAAGTTTAATAttcaaagattattttatttaagacaaCTATTACATATAACAATTCCGATTGCAACAAGTGCAGTGGGTTTGGTGGCTTCTTCGTAGACTCCAACCATGACGTTTTAACCTCAGGAATATTCAAACgaggcaaaaaaaatatataatcttcaagtggaccagaaaacaaaaacaaggtaaGCCTCTTTAAAGCCAAATgctatttgtaattattttacttatttattattttttaatggcataCTTCTGTTTAGTACTTCTCCGCCTACTGATTTATCATTAACATGTCCTCCAGTATAATCAAACACAATCCTGTCCAACAAAAACgccaatttattattttcaaacatttattacaatttggtttgaaaaacaacaataaatatatttctcttaATGGAACAGCTCCTGTAATATGACAAAAATAACCAGAAACAAATTAACCTCAGAGAATACAGTACCAATGTGTGTAATATGTGACATTCCATTATctaagcttaaaaaaaaactaaaactgtttCAAATGGTATCTTGGGACCTTTATTTGACAAAGGACTAGATTTGGAAGAGGTGCATTTGAAAAATTAACGGGGCATGCGCAAAATTAGTATAACAAAAATGTGCTGACCGCAGCGGGCCATAGTCTGGACACAAATGTGTGGTGTTAAATTTGGATGTTTTTCGAGGTCTACAATTTCTTCATGTTTCCcgatttcattttcattcccgGCCAGAAaaaagggagaggggggagaCAATATATTACACACCATTCAAATTTGTCACCCTGGTCCCAAGTTTCAGAATGACGTTGTTCAAATGACCGTACCCCAGCTCTGTTGTCAGGGTGAATACTGACAAAGCACCGCCATGTCTGCAGACCACAGGTTTCCCATCTGAATGGAACTGTCCAGGTATGCCAGACAACAAGCAATGCATGCATGGCTAAATAATACACGCACATTAAAACAAGGTTAGCTTTATAAACTTAATTCACAGTTCGGATGGTGACCGCATATTCAATCTTATTTTTTACCACttcagtgttcattttaattgccAGATTAGTGAAGTCTCTCCCCCTCAAGCACCCGGCCATGCAGTCTTCAGGGATCTTTCAGGAACTTGGTTTGATAGCAACAtggttttaaatcattaaaaagccACATAGTCACTTAGGGTTGTTCTGAAACTTTGGATCCAGTGGCAAGAACCATAATCTCAATTCACATTCCATGCCTGATAACCTCAGGCAAATATAAAGTctggcattctttaaaaaagaCCAGCAGTCAGTGGCTACCTCAAAGTAAACCTGTATATTAAATGCCAGATAGTTTATGGTGTCTTCGTACTCAAGAAGGATAACAATGCTTTTAtgctttacttttaattaaatcaaatgggGCAGATATAGTCTGGGCTTTAAGGCATCATGCAGCTAGAataactaacaaaaataaagatcttTTAAAGTAACAGATGTATACATGGTTACATGTTCTAGGTTTATTGAgacccaaaaaaaaatatttaaaaaattaacatGATCATTAATCAACACTAGTCACGTCTGTAGTCTTTCCTGTTAAAAAGTGCATACAATTACCATGTTCTCACTTTCACTCTTGCTTTTGGGGTCTGATGCCAAGAAAGTTGTTTAAAAAGAGTCATCCAGTGGGTTTACAGAGTTAACCTGCGGTGATGTTCACACATACAGACTGCTCAGGAAAAGaccagaacaaaagaaaaaaaaaaaagtttctttcAACCGCTTGGACTTAAAATTTTAGCACAGTTGATGCTATATTCTTCTTCtagaaaaatgtgaaaattttATAACCAAATGTTCAACCAATAAAAGTCTATTGGGTTCAAGTTGTACATGTGTGGATAGCGGAGGCAGACTTTATAACCAGACATGGGATCAAATATGGTGAACTGAGACTCCTTTCTGCCACGGCTCCAGAACATCGGCTTTAGTCAATGTATTGCGCCAGCCAACGGAAGCCTTCCCCGTATCCCTGCCTCTTCAGGACACTGCACATAAACACTTCTAGTGGTCTTGTGTTCAGCTCCTTCATCGGAACATTGCcCTTGCCCGTTGTCTGTCCATACAATCCAAACATTTCACGTAACTTCTCCTCACTGATGGCTTCTGGTCGATCAATCTTGTTACCGAGGATCAAGATAGGCACATTTCCAATAGTTTCATCTGTCATTAGTGCCTGCAGAAAACATTAAGCACACAGTCAACACATTCACAGAATATGAGAGTGACAGCTGCATTAGTCTACTGAATTGTCACGAAGGAGAACACAAGCTCACACC

Function

symbol description
sar1b Predicted to enable GTPase activity. Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; intestinal cholesterol absorption; and organ growth. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in blastomere; digestive system; nervous system; pharyngeal arch; and primary germ layer. Used to study chylomicron retention disease. Human ortholog(s) of this gene implicated in chylomicron retention disease. Orthologous to human SAR1B (secretion associated Ras related GTPase 1B).

NR:

description
PREDICTED: protein very KIND-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131866 True 2350 lncRNA 0.38 2 16032251 16035023

Neighbor

gene id symbol gene type direction distance location
AMCG00011264 sec24a,LOC102796029 coding downstream 7502 16004972 ~ 16024749 (-)
AMCG00011266 NA coding downstream 27861 16000144 ~ 16004390 (-)
AMCG00011265 ddx46,LOC107757870,LOC107571605,LOC107713612 coding downstream 32234 15987078 ~ 16000017 (-)
AMCG00011263 cssa04h5orf24 coding downstream 46353 15978697 ~ 15985898 (-)
AMCG00011260 NA coding downstream 55244 15975031 ~ 15977007 (-)
AMCG00011272 ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100 coding upstream 75247 16110270 ~ 16114959 (-)
AMCG00011274 tcf7 coding upstream 114713 16149736 ~ 16177066 (-)
AMCG00011273 NA coding upstream 163097 16198120 ~ 16199539 (-)
AMCG00011279 rapgef6 coding upstream 505634 16540657 ~ 16579592 (-)
AMCG00011281 NA coding upstream 602273 16637296 ~ 16664404 (-)
G105326 NA non-coding downstream 463127 15535370 ~ 15569124 (-)
G105282 NA non-coding downstream 628018 15385716 ~ 15404233 (-)
G105298 NA non-coding downstream 635859 15391732 ~ 15396392 (-)
G105291 NA non-coding downstream 657488 15373347 ~ 15374763 (-)
G105261 NA non-coding downstream 709539 15298645 ~ 15322712 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding upstream 104076 16139099 ~ 16141338 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding upstream 201105 16236128 ~ 16237685 (-)
G105479 NA non-coding upstream 209673 16244696 ~ 16247301 (-)
G105553 NA non-coding upstream 620224 16655247 ~ 16725153 (-)
G105607 NA non-coding upstream 858937 16893960 ~ 16895074 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 58379 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 516576 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 659072 15370402 ~ 15373179 (-)
G105050 NA other downstream 1963690 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 2035662 13993983 ~ 13996589 (-)
AMCG00011271 LOC107562913 other upstream 8348 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 908909 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 1682603 17717626 ~ 17751099 (-)
G105770 NA other upstream 1716230 17751253 ~ 17751502 (-)
G105793 NA other upstream 1964645 17999668 ~ 18000445 (-)

Expression


Co-expression Network