G105438


Basic Information

Item Value
gene id G105438
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16067233 ~ 16067442 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131881
ATGTACGCAAATGTTGCACTTGTCGCAGAACACCATCTCGTTGCCGTCCTCCCCCTCGGGTGAGCGACACACGTCACACACCACGTCCTCGTCATATTCGATGCCCAGCCCCTCCTCCGTCTCTATGGCGATCTGCATGTTCTCGTAGCATTGGCTCTCCAGCTCTTCGATAACCCTCTCCATAGTGAGCTCGTCCAGCTCGGGCAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131881 True 210 lncRNA 0.58 1 16067233 16067442

Neighbor

gene id symbol gene type direction distance location
AMCG00011262 sar1b,LOC107603246,LOC107713617,LOC107668454,LOC107657201 coding upstream 34208 16031074 ~ 16033025 (+)
AMCG00011258 pitx1 coding upstream 113456 15948639 ~ 15953777 (+)
AMCG00011256 NA coding upstream 240664 15825613 ~ 15826569 (+)
AMCG00011254 NA coding upstream 267740 15755286 ~ 15799493 (+)
AMCG00011257 NA coding upstream 403192 15649737 ~ 15664041 (+)
AMCG00011270 NA coding downstream 52426 16119868 ~ 16124691 (+)
AMCG00011269 ppp2ca,LOC107603261,LOC107692973,LOC107728270 coding downstream 66010 16133452 ~ 16141505 (+)
AMCG00011267 skp1,Skp1,SKP1 coding downstream 76397 16143839 ~ 16148914 (+)
AMCG00011276 vdac1,LOC107557296,LOC106603817,LOC106567523 coding downstream 166163 16233605 ~ 16240750 (+)
AMCG00011275 cunh5orf15,kct2,si:ch73-269m14.2,c18h5orf15,LOC107557298 coding downstream 175885 16243327 ~ 16247084 (+)
G105436 NA non-coding upstream 3484 16062914 ~ 16063749 (+)
G105434 NA non-coding upstream 10784 16056165 ~ 16056449 (+)
G105390 ddx46 non-coding upstream 69501 15996377 ~ 15997732 (+)
G105370 NA non-coding upstream 205543 15859758 ~ 15861690 (+)
G105365 NA non-coding upstream 228128 15821308 ~ 15839105 (+)
G105448 NA non-coding downstream 65316 16132758 ~ 16132987 (+)
G105466 NA non-coding downstream 132607 16200049 ~ 16200299 (+)
G105538 NA non-coding downstream 657246 16724688 ~ 16725153 (+)
G105684 NA non-coding downstream 1242317 17309759 ~ 17312068 (+)
G105715 NA non-coding downstream 1311178 17378620 ~ 17378860 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 83154 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 193744 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 211449 15853764 ~ 15855784 (+)
AMCG00011253 NA other upstream 214844 15850646 ~ 15852389 (+)
AMCG00011250 NA other upstream 579861 15472259 ~ 15487372 (+)
AMCG00011268 NA other downstream 38144 16105586 ~ 16110381 (+)
AMCG00011293 plac8l1 other downstream 911050 16978492 ~ 16982241 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 1716721 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 3039831 19107273 ~ 19117369 (+)
G105916 NA other downstream 3154613 19222055 ~ 19222421 (+)

Expression


Co-expression Network