G105454 (zgc:56064,LOC102205414,LOC107684868,LOC107564119)


Basic Information

Item Value
gene id G105454
gene name zgc:56064,LOC102205414,LOC107684868,LOC107564119
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16139099 ~ 16141338 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131897
AAACAGTTTGGCATTTTAATAAAGCACTTTAGATATATGTCTCTCCAGAAATACACTACAAAACATCTGaagactttaaaaatgtttttaaccattcaaacaaaTACTAGAATACTTACAAGGAGTATTTAAGAGTGTCATCAAGTTCCATGATAGCTGCCTGGTTACCACAGCGATAGCAGTAATTAGGTGCACTGAAAATCGTTACCACGTTGCGATCATGGCACCAGTTATAACCCTCCATCACCAGCTGGTGAGCTCTTGAGACCAAGGTAAGGCCATTGGCATGATTAAAGGTTTCAGAAATATCCTGCCCGAAGGTGTATCCAGCACCTCGAGGAGAGATCCCCCAACCTCCACGGTCATCTGGGTCTGACCACAGCAAGTCACACATTGGCCCCTAAACCAAGGAAATCACATTTGACTCAGAGAGAAGttgaaatcagaaaaaaaggaCTCTCTGAGAAAAGGACTTCAACAGAACAGATCCATCTCCTAACTGGTGACCGTTCAGAGCTGTTGTGAAACTCCAGCCTTTCTACTACAcctataatgtttaatatagtCTTATAATATCTCTGTGTTCCACTAATGGATCATCAATTGCTCAAATTCATCCATGTGTCCGTCTGTGTACCTAAATGGCACCACATGGAGAAAACCAGATCCCCTGGAGATGCTAGAGGATCTTTACCTCATGTGGAACTTCCTGTAGGCGGTCAAGCGCTCTGATGTGATCCAGTGTATCTATAGATGGTGACAATCCTCCATGGAGGCAGAATATCTTTGGAGAAACAGCGAAAGATCAGAAAAGTTGCAATGtagtattattaaaacaaattcaaacactTAACTTCAACTTGACACTCAGGTAACtcatatttgcatttacatCAAACCCAAAGTTTACGGTTGATCcaaattacaacaaaatatacTTTCCATCCGCGAATTGTGAGCTTCTTACCTGGCCATCTACCAAGGCAGTGAGGGGAAGATAATCAAAGAGGTCTGTGAAGTATTTCCAAACATTAGCATTTCCGTATTTCCTTAAACACTCATCGTAAAACCCATATACTTGTGTGATCTGTCTGCTTTCGTGATTCCCTCGAAGAATTGTGATGCGTTCACGGTATCACCTTAAGAGCTACAAGCAGCGTGACCGTTTCCACAGAATAATACCCTCTGTCGACATAGTCTCCCATGAAAAGGTAATTTGTGTCTGGAGACTTTCCTCCGATTCTGAATAGCTCCATAAGGTCATGAAACTGTCCATGCACGTCTCCACACACTGTGACGGGACACCGAACCTCCTGCACATTTGATTCTTTTGTTAAGATTTCTTT

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit beta isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131897 True 1346 lncRNA 0.41 3 16139099 16141338

Neighbor

gene id symbol gene type direction distance location
AMCG00011272 ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100 coding downstream 24140 16110270 ~ 16114959 (-)
AMCG00011264 sec24a,LOC102796029 coding downstream 114350 16004972 ~ 16024749 (-)
AMCG00011266 NA coding downstream 134709 16000144 ~ 16004390 (-)
AMCG00011265 ddx46,LOC107757870,LOC107571605,LOC107713612 coding downstream 139082 15987078 ~ 16000017 (-)
AMCG00011263 cssa04h5orf24 coding downstream 153201 15978697 ~ 15985898 (-)
AMCG00011274 tcf7 coding upstream 8398 16149736 ~ 16177066 (-)
AMCG00011273 NA coding upstream 56782 16198120 ~ 16199539 (-)
AMCG00011279 rapgef6 coding upstream 399319 16540657 ~ 16579592 (-)
AMCG00011281 NA coding upstream 495958 16637296 ~ 16664404 (-)
AMCG00011283 NA coding upstream 523575 16664913 ~ 16699921 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 104076 16032251 ~ 16035023 (-)
G105326 NA non-coding downstream 569975 15535370 ~ 15569124 (-)
G105282 NA non-coding downstream 734866 15385716 ~ 15404233 (-)
G105298 NA non-coding downstream 742707 15391732 ~ 15396392 (-)
G105291 NA non-coding downstream 764336 15373347 ~ 15374763 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding upstream 94790 16236128 ~ 16237685 (-)
G105479 NA non-coding upstream 103358 16244696 ~ 16247301 (-)
G105553 NA non-coding upstream 513909 16655247 ~ 16725153 (-)
G105607 NA non-coding upstream 752622 16893960 ~ 16895074 (-)
G105701 NA non-coding upstream 1168452 17309790 ~ 17312068 (-)
AMCG00011271 LOC107562913 other downstream 40920 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 165227 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 623424 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 765920 15370402 ~ 15373179 (-)
G105050 NA other downstream 2070538 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 802594 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 1576288 17717626 ~ 17751099 (-)
G105770 NA other upstream 1609915 17751253 ~ 17751502 (-)
G105793 NA other upstream 1858330 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 2039308 18180646 ~ 18191195 (-)

Expression


Co-expression Network