G105479


Basic Information

Item Value
gene id G105479
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16244696 ~ 16247301 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131928
CTCCTTGAAGACCTGTCAAACCGCATTGatgacatttcaaatgcatccctctctctgttAACACACAATACAATGGACATACCAAACACCCAGTCAattatataaacagaaaaacatgttgCTTGAATCCTGAGACGAAGAAAGTACTACACTGCCAAGACAAACATTGAACTATTACCTATGCATTGACAGATGTCCTCTTGACTTTGAGCTGGCTGTGAACAGTCAAATAAATCTCTAAATATCACAATATCAGCCTTTAGTAAGTAGACCTTCATCTCCTGCCGCCTATCTCTATGTTCTCTGTTAATCAGTCACTTTTGTTActataaaacagaaaagcaggaAATCATATCTACCCATGCTTTagatttattatcatcatcatcattgtatCTGCATGTCTATAAAATACATCCAGaataaagtaaatcaaataCAGTAACTGtcaacaaacaattaaaaataaaaatagcattagAGACAGCCTACTAATAAGTACAAGCCCCATGTACAATTGTGCTTTATTGTCAAAAAAccattgcatttgtttacaatatGTAACCAGAAGCAAATTTTCTTACTGACATTATATTACAGTACCATGCATGACAAGAGTTCCTTCCCATGCTAAAACACAACTAAATATGGTCTTTACAAGGATGACAACTGTTAAACTTGCAATATAATGCACCTTACTGCAAATCAGCATTATTTacacaagaggaaaaaaaaattacatatgaAAATAGTGCATACAATGGCAAACTGAAAAAGGAATATTCATTAACATGGCATCTTAATATTGTTGGCAAAGGccagtttgaaaacaaaacagaaatttaaATGTTCTCTGGTATGACAATACAGATTTTAGATTAACTACCAACCAcctaaaaatatttcaaagtgcAAAAATTATGCAAGGTAATttagggatttttttatttttttttaaatcaatgcacTTCTGAAGTCTTTCACAAAACTCCTTCAATGACCGACACATTGGCAAATAATTCAGCATTCAAACATCTTGTATTACCTCAAAGAAACATccttaatttgaatatttttgtattagtaaaCAAATCAATCTGAGACTCTCAAACTTTCTAATAGCCATCATTTAAGTATAACGAAAATACATTTAGCTAtgcttgaaaaatattttttgtttatggacgcattttttataatttatgtatgcatagtgtatgtgtatattatatacacacgcagcataacaggaaaaaaaaaagcaataagaCGCCTGAAAAGGGGGCATAgaatagaaaattacatttgtttaataagaACCTGTACAAAGGTTAGCCAGAATATGCAATCAAATTCTTGACAATGTAATTTATCTTAATCTTATTAAGATAAGAACAATGTCtccatgtgaaaatgtaaaggCTTTACTTATAGACTTCTACCAATCTGATATGGCAATCCAGTAAACCTCctattaaaaagacaaacttTGAGGTAGGCCCCTGAATGTGGACAGACATGAAGACTCATCTTGGTTGGATAATTAACTACTGAAACTATGTAATGATATGTACTTTTAACATTTCACATCCTCAAACACATCTGAGTTTAGTTTCTACACCTggattttgtttcctgtgtgcATTTCCATTTAAGTAATCTCCCGTGTAATTACACCAAGgaccttttttccccacaaacaaagcactttttttatCTTGCTCTTAATTGGAAAGCTAAGCAAATTAACAGCAGAATAGCAGGTTTCTCAGCAAGTGCTATTtcagggtgtgtgtttgtgcaatacattattttcagttcactattaaataaacatggtCATTTAATGTGTCAATGTGCCTTCTGTTATTAAATTCACTACTGCTTGGTGAAACAGTGCTTTATTTGATATTTACCCAGAAAAGTACTTCATATTCCTGTACATTTCCCAATGGTCTCCAAGTATTACACACAATAATCTACATGGTCAATTTGGAATACAGGTCTCAAGAAACTAGCATAAAAAGtcaacaaataaatagtcTGCCTACCGAGGTATAAGGTTAGGAATAAGCAAGCATGCACATTTAAacccagggagagagagagagagagagagagataaggcAGTAACTAGGAATTAGGAATGCAACATTTGCAACAGTAGTATTTTGTTTACTGAATAGTTTACCTAAATAGAAGTATGGTTTAAAATGAGATTTATGTGAGGCGTGACGCTACCATTATCACTGCCATTATAAATAGTGAAGTGCTCTGCTAttagactatatatataatgaatcaAAAAGGAACTCAACCAAGGAGCTGTCTTTTGAGCTCGAGATTAAATGCCATTTGCCCGTGAGTAGATTGTTGCACGTGGAAATGGGAAGTTAAGAGTTTTTACATTTCATCTAGAATATATAATCGTTGGTCATCTTGAGAGATGGCATGGCTTCATTGACATTTTGGTCCAGTCTGTGATATTCCACACTTCTGGAGCACAGTCCATCCCTCCACCTTCTGCTCTGAGCCAAGAGGTAAATCTAGagtgggaagagaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264702

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131928 True 2575 lncRNA 0.34 2 16244696 16247301

Neighbor

gene id symbol gene type direction distance location
AMCG00011273 NA coding downstream 45157 16198120 ~ 16199539 (-)
AMCG00011274 tcf7 coding downstream 67630 16149736 ~ 16177066 (-)
AMCG00011272 ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100 coding downstream 129737 16110270 ~ 16114959 (-)
AMCG00011264 sec24a,LOC102796029 coding downstream 219947 16004972 ~ 16024749 (-)
AMCG00011266 NA coding downstream 240306 16000144 ~ 16004390 (-)
AMCG00011279 rapgef6 coding upstream 293356 16540657 ~ 16579592 (-)
AMCG00011281 NA coding upstream 389995 16637296 ~ 16664404 (-)
AMCG00011283 NA coding upstream 417612 16664913 ~ 16699921 (-)
AMCG00011284 NA coding upstream 498296 16745597 ~ 16746212 (-)
AMCG00011282 NA coding upstream 506355 16753656 ~ 16764495 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 7011 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 103358 16139099 ~ 16141338 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 209673 16032251 ~ 16035023 (-)
G105326 NA non-coding downstream 675572 15535370 ~ 15569124 (-)
G105282 NA non-coding downstream 840463 15385716 ~ 15404233 (-)
G105553 NA non-coding upstream 407946 16655247 ~ 16725153 (-)
G105607 NA non-coding upstream 646659 16893960 ~ 16895074 (-)
G105701 NA non-coding upstream 1062489 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 1312101 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 1316868 17564169 ~ 17566963 (-)
AMCG00011271 LOC107562913 other downstream 146517 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 270824 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 729021 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 871517 15370402 ~ 15373179 (-)
G105050 NA other downstream 2176135 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 696631 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 1470325 17717626 ~ 17751099 (-)
G105770 NA other upstream 1503952 17751253 ~ 17751502 (-)
G105793 NA other upstream 1752367 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1933345 18180646 ~ 18191195 (-)

Expression


Co-expression Network