G105538


Basic Information

Item Value
gene id G105538
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16724688 ~ 16725153 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131997
AGCCACACACCGTGGTCATCCTTCCAATGTGCcacagtatacatatatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcggggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcaaAAATGCcgactgattcaagctgatagaagagcaactttgactgaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131997 True 433 lncRNA 0.43 2 16724688 16725153

Neighbor

gene id symbol gene type direction distance location
AMCG00011280 NA coding upstream 11912 16706327 ~ 16712776 (+)
AMCG00011277 NA coding upstream 253427 16453070 ~ 16471261 (+)
AMCG00011278 NA coding upstream 297671 16426014 ~ 16427017 (+)
AMCG00011275 cunh5orf15,kct2,si:ch73-269m14.2,c18h5orf15,LOC107557298 coding upstream 477604 16243327 ~ 16247084 (+)
AMCG00011276 vdac1,LOC107557296,LOC106603817,LOC106567523 coding upstream 483938 16233605 ~ 16240750 (+)
AMCG00011285 NA coding downstream 23078 16748231 ~ 16755779 (+)
AMCG00011289 p4ha2,LOC102786823 coding downstream 102023 16827176 ~ 16842696 (+)
AMCG00011287 rad50,LOC107684216 coding downstream 140214 16865367 ~ 16894925 (+)
AMCG00011288 lars,LOC102775971 coding downstream 237163 16962316 ~ 16977460 (+)
AMCG00011295 NA coding downstream 281301 17006454 ~ 17008286 (+)
G105466 NA non-coding upstream 524389 16200049 ~ 16200299 (+)
G105448 NA non-coding upstream 591701 16132758 ~ 16132987 (+)
G105438 NA non-coding upstream 657246 16067233 ~ 16067442 (+)
G105436 NA non-coding upstream 660939 16062914 ~ 16063749 (+)
G105434 NA non-coding upstream 668239 16056165 ~ 16056449 (+)
G105684 NA non-coding downstream 584606 17309759 ~ 17312068 (+)
G105715 NA non-coding downstream 653467 17378620 ~ 17378860 (+)
G105756 NA non-coding downstream 1009837 17734990 ~ 17742387 (+)
G105769 NA non-coding downstream 1026097 17751250 ~ 17751484 (+)
G105776 phykpl,LOC100691570 non-coding downstream 1040738 17765891 ~ 17768221 (+)
AMCG00011268 NA other upstream 614307 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 740609 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 851199 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 868904 15853764 ~ 15855784 (+)
AMCG00011253 NA other upstream 872299 15850646 ~ 15852389 (+)
AMCG00011293 plac8l1 other downstream 253339 16978492 ~ 16982241 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 1059010 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 2382120 19107273 ~ 19117369 (+)
G105916 NA other downstream 2496902 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 3370076 20095229 ~ 20162966 (+)

Expression


Co-expression Network