G105553


Basic Information

Item Value
gene id G105553
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16655247 ~ 16725153 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132017
ttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccgTTCTCccctgacctctagcatcaataAGGCATTTttgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccccgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatatatgtatatatatatgtatgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132017 True 446 lncRNA 0.42 2 16655247 16725153

Neighbor

gene id symbol gene type direction distance location
AMCG00011279 rapgef6 coding downstream 75655 16540657 ~ 16579592 (-)
AMCG00011273 NA coding downstream 455708 16198120 ~ 16199539 (-)
AMCG00011274 tcf7 coding downstream 478181 16149736 ~ 16177066 (-)
AMCG00011272 ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100 coding downstream 540288 16110270 ~ 16114959 (-)
AMCG00011264 sec24a,LOC102796029 coding downstream 630498 16004972 ~ 16024749 (-)
AMCG00011284 NA coding upstream 20444 16745597 ~ 16746212 (-)
AMCG00011282 NA coding upstream 28503 16753656 ~ 16764495 (-)
AMCG00011286 NA coding upstream 51198 16776351 ~ 16804290 (-)
AMCG00011292 kif3a coding upstream 185167 16910320 ~ 16920194 (-)
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding upstream 209353 16934506 ~ 16935842 (-)
G105479 NA non-coding downstream 407946 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 417562 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 513909 16139099 ~ 16141338 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 620224 16032251 ~ 16035023 (-)
G105326 NA non-coding downstream 1086123 15535370 ~ 15569124 (-)
G105607 NA non-coding upstream 168807 16893960 ~ 16895074 (-)
G105701 NA non-coding upstream 584637 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 834249 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 839016 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 1029174 17754327 ~ 17755758 (-)
AMCG00011271 LOC107562913 other downstream 557068 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 681375 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1139572 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1282068 15370402 ~ 15373179 (-)
G105050 NA other downstream 2586686 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 218779 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 992473 17717626 ~ 17751099 (-)
G105770 NA other upstream 1026100 17751253 ~ 17751502 (-)
G105793 NA other upstream 1274515 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1455493 18180646 ~ 18191195 (-)

Expression


Co-expression Network