G105701


Basic Information

Item Value
gene id G105701
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17309790 ~ 17312068 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132221
attttattatatgaatGATTGCTCTGCTTTACCTGCGTTATTATAAGTGACTTACAATTATTGAACTAaccattttctttattgtttacaATGGTGTCTTGTCATCATCATACCTACCAGAGTACAAGTGTAATAAAGTTTGAAAAGtaccacgcacacacacaaaaaggactTTGCAGCCCGACATTTAATCAAATAGGTGAAAGATCAACATTTACTACAGATGTATAATACAGAAGTCatagaaaactattttttaaatgtttttgtttacattggaTTAACATGTacataattgaaatacaaacaaaacagacttgaATGAAAGCCATATACCAGTGAAATATGATCTGCCcttaattatttctttaaaagatAGTATTTGCATGTATCTTATACAAAATAGACTTTTTCAACCAGTATTACGGTAGTGCAATTTCATAGGCTCGAGCTGATAAGATTACTTTCACACACAGGTCTCCTCTCTCTGAAGTGACTGGCTAATTTCACAGTAATATACAAGAGACCAAAGCCCTaaaccattacaaaatatatatttttattttgttactttactTGAGTGCTATTGTACATCTCCTGTAACTGCCTAAATATTTCTGCTTTGGTCACTGAAGTGTTGaactatacaaaatatacactccAGTTACActttctgttatttatgtaaaacatatggcatatatatatttttttgttttataaatctttCCCATCAAGATAtagaatttacatttatttacaattcaaatgaaatcataTGAACAACTAATATTTCTAACACTTAGAAATCACATTTAGATAcggttgtttaaaaaataaaacaaaaacaaaccaacatcaCATTATCGTCCTTAGCCATTttaactgattaaaataaaattgaagattaaaatgtttaataaaacccAAGAGGATATTAACTGGATTAGtctgtattaatatttgtatagatAAAATATATGCTTAGCTGTATAGCATTTACAAGGAGAATTTACATTTGTCTGATATATTTCCTGAATTTTCAACATAATAGCAGAATCTCAATTTTCTTTatcaattcaaatgaaatgaaaggcaaTCATTAAAACTGGTCTAAAACactgaaatcattttatttttagatgacttgtatttaaatgcaACGATCTTCATAAAAATACGGATTCTCATCACATACGGACATCATTATTATTGCCAAAAGAGGGGCCCAATCAAACGATTTGACAATACCCTGATACTGTATGTGAAAGTAACCTGGAAggataaaacaatcaaaataaacaaactgcagtGGAGCAGGGGTAAAGCGAAGGAAAGCATACAAGGAATAGTCTTGACGAATTACGTTAATGAAGATTGCAAATGAGCAAATGAGACTTAAAATCCATTAATCGTGAATCTCTTTTTGCCACATCAGAGAAAGACTGAACATTTCAACGTCAGGTCGACAGCACAGCTCTGACATTGATCAAGATCGTCGGCTTGCCACTCACACACAGCTCTTTGTCACACACAAGACATTTCTTCAACTGCCTCGTGGCTCCTGGAACTGGTTTCAGCACAGAGATCAGGGACTGTAATGCCATAATAATCGGCATCtccacattacattattattattactgttacaaatctgtaaaatCTCCATTGACTCCAGTTAattacacactttttttttttccttgactATATCCAGAGAACCCGTGTAAAATAAGGCTGTGAGGTGATCTGTAACAACAAGGGGTAATTTGCCACAACAGTGACAGACTACTAGACAGTATGCTGGCCGGGTTTGTGCAGAATTACactagaaattaattaattatgtaataataattagaacTTGAAGGGTTAATGGgctaaaaaaaatagtttcctgCTAAATCTATTGTCGCTATTCTCTTCCAGAAAACTGTAAAGCTTTAATTTAGtgcagtgcattttttttttaaaacaaataagactTACAATTCCCAGATTACAATTACTAGACCTTGCttataaatgcttatttttgtctgaattaaattagatatctACTTTAGTTTgcctattttttaaatgttttgccatgtgaatagtttttttttttaacatctcgTTTAACCTAGTTAgcataataatgaattgaatcaatcaatcattcattCATCATTAAAGTCTTAAAAGCTGCATTGTTTCCTCTGAACTGAGATCAAAAGACAATTAACactatgaatttaatttaaaatattttcctttttgcagGAAAACATGCT

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 26B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132221 True 2279 lncRNA 0.31 1 17309790 17312068

Neighbor

gene id symbol gene type direction distance location
AMCG00011299 kctd16,LOC106603861 coding downstream 106260 17173697 ~ 17203530 (-)
AMCG00011297 kctd16,LOC106603861 coding downstream 150204 17148015 ~ 17159586 (-)
AMCG00011294 NA coding downstream 305286 16978598 ~ 17004504 (-)
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding downstream 373948 16934506 ~ 16935842 (-)
AMCG00011292 kif3a coding downstream 389596 16910320 ~ 16920194 (-)
AMCG00011301 arhgap26,LOC107713172,LOC107661718 coding upstream 383 17312451 ~ 17342762 (-)
AMCG00011304 NA coding upstream 67658 17379726 ~ 17395987 (-)
AMCG00011303 NA coding upstream 122434 17434502 ~ 17452768 (-)
AMCG00011311 NA coding upstream 449842 17761910 ~ 17773165 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding upstream 471972 17784040 ~ 17785842 (-)
G105607 NA non-coding downstream 414716 16893960 ~ 16895074 (-)
G105553 NA non-coding downstream 584637 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 1062489 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 1072105 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 1168452 16139099 ~ 16141338 (-)
G105752 NA non-coding upstream 247334 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 252101 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 442259 17754327 ~ 17755758 (-)
G105782 NA non-coding upstream 485375 17797443 ~ 17800287 (-)
G105786 NA non-coding upstream 494611 17806679 ~ 17806929 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 348721 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 1211611 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1335918 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1794115 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1936611 15370402 ~ 15373179 (-)
AMCG00011313 NA other upstream 405558 17717626 ~ 17751099 (-)
G105770 NA other upstream 439185 17751253 ~ 17751502 (-)
G105793 NA other upstream 687600 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 868578 18180646 ~ 18191195 (-)
G105890 NA other upstream 1790225 19102293 ~ 19105269 (-)

Expression


Co-expression Network