G105756


Basic Information

Item Value
gene id G105756
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17734990 ~ 17742387 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132287
agggggagagaggaacaaCAGGCAAAAAAGGGATGAGGGGGCAGAAGGGAGAGCAAGGACCCCCTGGATTGGACCAGCCTTGTCCAGTGGGATCAGATGGACTACCTGTACAAGGATGTTTGCAGAAGGATAAAGCAGCTTGGCTGAGACCCAAAATGAAGAGAACTTCTCAGCCTTAGAGAGACATGGATTGCTCTAGGTACTGAGCAAATTCTTGGAGGTCAACTAACTTGGAGGTGCGTCAACACCATGAACCAGGAGTGCCTGTGCAGCTTCTCAAGGGTGACATTGGACAGCAGGTCATGAATCCCAGGTCATAACACTTCATACTCTGGAAACCAATTTACCTGCCACAAGGGAGTCTGGAGGTGCTGCCATAACAGTCAAGGATTCGCCCTTGAAATCTGCAAAGATAGAAAGGGAACTTGAATTCTGGAACAAATTCTTTCATTGAGACACAGAagcatttttttcagtgttatttCAGTGTGACATTCTGTGTCttgtgtttaaaacattgtgaatgcaaccctggttatctgagagagagcatactacccaaaggggaaGGGCCTATGTCATTCACAGATCCCATGGTAATGACATAGGCCCCTTCGCCTTTTGGGTAGTCTCCTCGACTCAGAAGGTAATGCTGCGAAAATGGAACTAAACAGATattctatgtttttattttgttgctcttTAATGAAACAAACCAGCTGGGTTGTGTACCACATTTTATTAGTTATGTCCCAGACTGGAACATcatatgtaatgtaatacaaCTTATGTCTGCATGTATTGTGAAggaattattttccatttaaaaaaataaatctttccatttaaacatcaaacatatttaaaaaaaataaaacaaaaatatttacaaatgtgttaGGGTTCTTAGTACTATCCTATGCTTTGGATATGCAGTATTAACTTTAATATctttgatattaaaatgtattaccttGGCATTCCTTTgcattactatttttatttaaatttttcaagTTAAGAATTATACACACATCTGAAActtgatggatttatttataacacaaaaactacaaaaatctTTTTTTGGGGGTTACATAAATTAGGAGATTAACTGTACATGGTAACTCCATGTGTTGAAGGAAACTTaatattaaatttaaacttAAGCCTAACAAATCAAGGTTGATCAAATTTATCTGACTCCTCActcatttttttgttcttcactcCTCATCTCCTGTCTCCATTTCACAGATGATCTTTGTAATATATGAGGTCTGTGATTATCTCATTAATAGGTTGGAGGTGAGGTACTGCCTCCTCTGAGTAATCATAATTTGGTAACGGCATTGGCAATTTGATTTTCTCGACTGATCCTTAGTTGCAGGACCCTTTAGTCAGTACAAAACTGTTGCAGCCAGATCCTCACTTCAAATTACATCGataattacaaaaaactaaactaaataaaagacaattgccttcaaattgtttaaaaatttTCACAAGTGGTTGttctaaaaatatgtttaaattactaTTGCATACTAGCTGCTGGAGCAAAAGGAAAGAGAGACCCcttatataaatactgtattttataatgtcAAATGGTGCCTGGTGTTTTCTTGGAATAATAGCTGcttaaagttgtttttatgttctatATGATACTGTTTTTCAGTCAGTGACAACAACTTACAAAAGCAATGGGATATCCAAACTTTTTTCccatttctaaaattaaaatgttttgaattttttggtttaatttggatatcttttttattttaatttgtaattattacattatgttCAGTAATATTGTATGAGAAACAGAAAAGGATGTCAGACCTGTATGCAGTGTTCTCATTGTTGGAGAAAGCTGGTCAAACTCTTGACATTGACTGTATTTCAACTTTAATTTGCTTGTTTACAAGATAATCCTCCTCAGGCCTGTGAAAATatctttgcattttcttttcctgacgtgtaaaatatttgtctggcttttctaattttgttaattttcagcactgtatgttttattagATTGACAGAATGATAGGCAAAATAACATCCAAACATCATTCAGAAGTTGTATAACAATTGTGGTGCAGACatcatacagtacatatatgatacatatatacaaacatttgtGCACACATCACATTGAATAGCCCAAACTGCCATAAGAGAACAAAGgacacaaattattattttacctttgCAGTATTACTTCTATGAAGCAGTGAATTTTGCAGTACAGCAAAATACTTTGATATCAGTACTGCATATTTTAGTTTAGacaataatcaaaatgtttaggcaaaaacacaacacaaagtcAAACTCGTTTTAAAGTAgtctttaaatgtttagtttaacatttaaaaaattgagaaataacataaaaatgtatatattttatgtagattttcAGTGTCAATTTTCTGATAAGCAAGATTGAAAGCAATGAAGCaaggaaattacagaaaaactgtagtcatttttattattattgctgttatattttttatttaaatgtcatggTTCTAAATGTATATACTATTGGAATTATGCAGGGGTGGGTTTTTGAGCAAAGGAATAGGGGCAGGGGAGTCTGCAGACGATTGTTGAAATATGCTCAGATGGAGGCACAATATCTGATCATGTTCCATGTCATTgtaaaaggagagagagggagtgagaaaagagagaaagcatTCCCCGGTACCCATGAACCAGTGAAATTGGAACATTTCTTGGGTGAACTTGCTGCTTCAATTGAAGGGTCATATCCTAAAACAGATTAGGGATATTTGGGAAAATATAATAGCAGTTAATAAGCTTTCCCCATTTACTACAATGCTTGTacaattttgtaatgtttttttgtaatatatattttacattgcaatTGAGAAAACAGGAGCTTTCAGCTTTTGATTACAGAGCAGCATGATCCTGACAGGACTTGATACATTCTAATAGCTTCTGCacatgtttgatttttattgagTTATTTTTATCATATCGTAAATGTAAGATTCATTGTGGTAGAGATCTACAGTATTTACTTGGACACTTATTCCACATATTCTGACCAAGGAAGAGAACCATTTGTGTTTGGGACAATCACACAAGTGTTCATGCCCAGTTATCTGAAGTGCAACTACAATTTCTTATCTCCCATACACACTCCCTCTTTGAAGCTGTGTGCTTTATATCAGCATCATCAAgtcttgattatttttttccttacaTGGTGTGACAGTCTTTTATGAATAAGGTTTGCAGTGTGTTTGTAACATGAGCGATTAACTTGCATATCACCGTGTTGTTATTCTTGTTGGTTGTAAAAGAGATTTCAgctatttttttaactttcctctcttgttgtttttaagcaaaTTAGATGTTctgataaattaaatatacactataatccaattaaatttaataaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032502 developmental process biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132287 True 3474 lncRNA 0.34 3 17734990 17742387

Neighbor

gene id symbol gene type direction distance location
AMCG00011312 NA coding upstream 155274 17571125 ~ 17579716 (+)
AMCG00011308 LOC108441031 coding upstream 166762 17563585 ~ 17568228 (+)
AMCG00011307 rasgef1c,LOC102777120 coding upstream 178620 17544765 ~ 17556370 (+)
AMCG00011309 NA coding upstream 308492 17417595 ~ 17426498 (+)
AMCG00011300 LOC105025958 coding upstream 427166 17295543 ~ 17307824 (+)
AMCG00011310 gblp,LOC108268614,LOC107599381,LOC103033914,LOC108441034 coding downstream 3275 17745662 ~ 17750420 (+)
AMCG00011306 NA coding downstream 10387 17752774 ~ 17755758 (+)
AMCG00011305 hnrnpab,LOC103028658,LOC106611940 coding downstream 15439 17757826 ~ 17761783 (+)
AMCG00011324 gria1,LOC108427845 coding downstream 328014 18070401 ~ 18076037 (+)
AMCG00011320 gria2,LOC107575061,LOC108411138 coding downstream 349729 18092116 ~ 18098073 (+)
G105715 NA non-coding upstream 356130 17378620 ~ 17378860 (+)
G105684 NA non-coding upstream 422922 17309759 ~ 17312068 (+)
G105538 NA non-coding upstream 1009837 16724688 ~ 16725153 (+)
G105466 NA non-coding upstream 1534691 16200049 ~ 16200299 (+)
G105448 NA non-coding upstream 1602003 16132758 ~ 16132987 (+)
G105769 NA non-coding downstream 8863 17751250 ~ 17751484 (+)
G105776 phykpl,LOC100691570 non-coding downstream 23504 17765891 ~ 17768221 (+)
G105792 NA non-coding downstream 257249 17999636 ~ 18000343 (+)
G105794 NA non-coding downstream 290368 18032755 ~ 18033025 (+)
G105811 NA non-coding downstream 432968 18175355 ~ 18247768 (+)
AMCG00011293 plac8l1 other upstream 752749 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 1624609 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 1750911 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 1861501 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 1879206 15853764 ~ 15855784 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 41776 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 1364886 19107273 ~ 19117369 (+)
G105916 NA other downstream 1479668 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 2352842 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 2553624 20296011 ~ 20339325 (+)

Expression


Co-expression Network