G105782


Basic Information

Item Value
gene id G105782
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17797443 ~ 17800287 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132326
CAGGATGCAGTGACTCACAGGCTAGCATCAGCAGCTTTCCAAAAAAAGCCCCTCCTATTCTCTCAGGGCCATGAATATTAACCAGTCAAAAGGAGGGTGCAATCGATAACTCCCACTCTCTCTTAAACCCACGCCCTAGAAGAAGCAGCAGCACAGAAGGCACACAggctgacagagagaggaaaaggaaGACAGTAAAGCAGCTCTTGGAAGAATCCACATAAAGcaaaaatgTCTGACAAGCCTGATCTCCAAGAAATTGCCAGCTTCGATAAAACcaaactgaagaaaacagaGACCAAGGAAAAGAATCCCCTGCCGACAAAAGAAATCATCGAGCAGGAGCGGAAAGGAGAAACAACGCCTTAACCATGAAGACAGAAATATTTCCAAGATGGCACTTTGATTTGACTGTTACCcagtttccttttcatttaacaAAGAAAGCTTGCAAACAGCAAGAGGTGCATGATGGGAGGGATGAGCCATGGCACTGGTTTTACATTCCCGTATAGGGGGACTTTTACTTTCAAAGGAAGACGCGGCACATATCAAAATTCTTCTACTTGGTTAACCTGCTGTACACATAtgctttcttcttgtttttttcctccttgttGTTTATGAATAAAGCtaactggaaaagaaaaagattgtaGATGTTTCTGTATACACAGTGCCTCCTGTAGGTCAGTCTCTGTTGTGTCACACATTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132326 True 716 lncRNA 0.43 3 17797443 17800287

Neighbor

gene id symbol gene type direction distance location
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding downstream 3937 17786920 ~ 17793506 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding downstream 11601 17784040 ~ 17785842 (-)
AMCG00011311 NA coding downstream 24278 17761910 ~ 17773165 (-)
AMCG00011303 NA coding downstream 344675 17434502 ~ 17452768 (-)
AMCG00011304 NA coding downstream 401456 17379726 ~ 17395987 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding upstream 396254 18196541 ~ 18197251 (-)
AMCG00011317 NA coding upstream 471125 18271412 ~ 18272204 (-)
AMCG00011330 NA coding upstream 1316210 19116497 ~ 19121979 (-)
AMCG00011334 NA coding upstream 1400209 19200496 ~ 19208029 (-)
AMCG00011333 NA coding upstream 1409535 19209822 ~ 19217839 (-)
G105774 NA non-coding downstream 41685 17754327 ~ 17755758 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding downstream 230480 17564169 ~ 17566963 (-)
G105752 NA non-coding downstream 235648 17559402 ~ 17561795 (-)
G105701 NA non-coding downstream 485375 17309790 ~ 17312068 (-)
G105607 NA non-coding downstream 902369 16893960 ~ 16895074 (-)
G105786 NA non-coding upstream 6392 17806679 ~ 17806929 (-)
G105787 NA non-coding upstream 197151 17997438 ~ 17997725 (-)
G105795 NA non-coding upstream 232468 18032755 ~ 18033145 (-)
G105823 NA non-coding upstream 375381 18175668 ~ 18247770 (-)
G105840 NA non-coding upstream 440389 18240676 ~ 18244145 (-)
G105770 NA other downstream 45941 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 46344 17717626 ~ 17751099 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 836374 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 1699264 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1823571 15963338 ~ 15973872 (-)
G105793 NA other upstream 199381 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 380359 18180646 ~ 18191195 (-)
G105890 NA other upstream 1302006 19102293 ~ 19105269 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 1610081 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 2065327 19865614 ~ 19867902 (-)

Expression


Co-expression Network