G105811


Basic Information

Item Value
gene id G105811
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18175355 ~ 18247768 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132361
CTAGCAAATAACCGTGTTTTATTACATATCCGTTATCATTAggttcatataaatatatttataaataaataagatgtatGTGTTAACTTTTAACTTGGCTAAACTACCCATTTGGTATTTATCCTAAAAGAAAACAGCTAGTGAAATTTTCTTCCATCccgattatttattttgctgaataTGTGACActaatttttaaatgattgtaatttatactgtacaaaactgaaatgccaGTACATTATTTGTACAGATTAGACTGAAAGAAATTGAATAGTAagtagaaaatacatataaaatatgctTGAAAACGTTTTATTAGATATTGTAAGTGAAAGTTTACATGGCCTTAAAGTGTTACGTGTAATGTGCAGAACACATACAACACATACCAGAGGTTTATTCCTCAACAAAAGATGCAGACCTGAAgatatacattgaaataaatacattctttcaAACACCAGGCAAacttatttcagttattttctcaCTTCAAAATTCATCATGTGAACATAACATAATCATCAATATTTAACATCCAATAACATGAAAGCACTTGAGCAAATACTAACTACAATATTTTCTACCtgatttaatatgtaatatgaagTTGGTCCAGGAAGTGTATTAAGCATAACAATGTTtacttatataacatatattattattaaaaaatgtaattccaatGTACATCGAACAGAAAACATCCCTGAACATTAAAAAGACATGCAAATTTGAATTGCAgtgtgcaaaaatatatatcaagagAAGGGGTTTTAATCGTTTAGGGCCGACTAATCCAttatcaaatgtaataaaaataattattatctCACTTTTCAGTGATTATTCCTAAAGTGCATGTATGCTATATGCTATTACTTCCCATTTAatggttttctattttatttttcctgataatttttatatttatggcAAGTGTGTCAATCTGATTAATCCAATCGATTAAATCCCCTGCCTTAAAGTATCccttttctgtaaataaaatatgtttccaCAAGACATTTCTTAATTTCCATGAGACatacatgtaaaatgcaaaaaatgcttagtgatttatttaaataattcttcTTCTTAAGATGTTACACATGTAAaccaaaaaaagtttttaaaaaatatgaaaaacaaaactttaatgCTCCAGTAATTTTGCCTGGTCTCTTGTAACTGAAATTATGCTCTTAATGCTATTATCAGTATTACTCAAGCACTATGTATTAACACATTTAGGTGTATATGTTCTGGTATTTAAGCATAAACAAGGTAGAGGTTATTATTAAGAGATTCAAGCTTAAAATATACTTATCTACAAAACCTATCCAATATTCAcgaaacaaaatcattttgttttcactaaTGCTCTAGGCATTATTTTGACATGTAGCCCAAACCTCCATACATGTCTCCTCCTTGTTATTAAAAGGCATACAAAGTAAAACACTATTGTAAAGCATTAATACCCAACTGACATTAACTTGAATGACtctaatgtatatgtacattgtAGCATAACAGATTATTGCATGTGCCCTGGCAATTCTGTTTTGCTCAGATTTTAATAATGATTGTTTAAGGTGCCATTTGCTGAAACAGGTGCTTTTATTGTATACTAAAACCTCCTGTTGACATTTTTATAATAGACAAATTGGATGAAGCCAAAAGGAATCTTAGGTTtagctttacattttcatacacagagaaaaaaaaggttacatttCTCCaaggaattaattttaattttgtgattATCTAATGATATTCCTGAATTCCTCTCTAGCATTATGAAATTACTGTCATCATGTATAGGATAGTGTTATAAACATTCCTAGTCCCCAGTACAATTATGTACCCATCTGCTACATAGCATCAATcaataaagtgtattttatttgaagctATAAAAGGTTACTATTGAttgaaataaaagctttttttatttaaggtaCTTATGGCATGGCTTTAGCTCCTGTAGCATGATGCAGAGATGCATTTCATCAAagcattgtaaacaaaacatcaaaatgtcATCGCTTTACAAATTCCATGTTGTACTTGAGTGACCTGTCACAGTATATTTGTGGTATTGTTTGTCACTCGAGTTATACCATGTTATTTAGATtttggaaagtttaatttttCCTCTTTGTGAATTTTAATACAATCTCTCAAGATTTATGTCATTTCATTGAATATAGTTTATCAAGCTTTGAAAATATAGCCATGTATCACTAGAGATTTGCTGAATGAATGCACTGAATGAAAATTGCTGGATGTAAACATGAAggtaattattttactttacatattaatttattttgtgtagccACAGTCATGGTGGGATAattcatattgtaaaatatcttgtatatattattacaaacaaCAACCAGAAGATTCCTTGCtatatctatattaattatAGATAGTTTCCATCAGGACAACAACACtgaatttccatttaaaatagtAAGGAAATCAGTGTTTGAATTTGTCTTTAAGCAACTGTAGGAAAGTTGCACATCTTACTTTTGGGTCAACTACAGGGAAAATAAAGTCTTAGAATCCTACAGTATGTCTACTAAATACAGCTTTTGCACAATAAATCCAGGTGTATTTGTTAATGgataaattactgtatttttaaccTCAGCTTTTGCCTCTTTAGAATATGCTAGGATATGGATGTTCAACAGGATTAATGAACATCAGTATGATTGAATTTTCTCTCATTGAAAAATTGTTATCATATTGTTCAGGCATTTGNNNNNNNNNNNNNtatacactcacctaaaggattattaggaacacctgttcaatttctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132361 True 2849 lncRNA 0.29 2 18175355 18247768

Neighbor

gene id symbol gene type direction distance location
AMCG00011320 gria2,LOC107575061,LOC108411138 coding upstream 77282 18092116 ~ 18098073 (+)
AMCG00011324 gria1,LOC108427845 coding upstream 99318 18070401 ~ 18076037 (+)
AMCG00011305 hnrnpab,LOC103028658,LOC106611940 coding upstream 413572 17757826 ~ 17761783 (+)
AMCG00011306 NA coding upstream 419597 17752774 ~ 17755758 (+)
AMCG00011310 gblp,LOC108268614,LOC107599381,LOC103033914,LOC108441034 coding upstream 424935 17745662 ~ 17750420 (+)
AMCG00011319 NA coding downstream 12032 18259800 ~ 18268657 (+)
AMCG00011325 LOC105903358 coding downstream 554870 18802638 ~ 18822410 (+)
AMCG00011326 si:dkey-34l15.2,tenm2,LOC107670182,LOC107707213,LOC101076136 coding downstream 699584 18947352 ~ 18999884 (+)
AMCG00011327 si:dkey-34l15.2,LOC107707213 coding downstream 769454 19017222 ~ 19042201 (+)
AMCG00011329 LOC108431127,LOC107658040,LOC107707213 coding downstream 806366 19054134 ~ 19090434 (+)
G105794 NA non-coding upstream 142330 18032755 ~ 18033025 (+)
G105792 NA non-coding upstream 175012 17999636 ~ 18000343 (+)
G105776 phykpl,LOC100691570 non-coding upstream 407134 17765891 ~ 17768221 (+)
G105769 NA non-coding upstream 423871 17751250 ~ 17751484 (+)
G105756 NA non-coding upstream 432968 17734990 ~ 17742387 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 369082 18616850 ~ 18617065 (+)
G106022 NA non-coding downstream 1340425 19588193 ~ 19588973 (+)
G106071 NA non-coding downstream 1555403 19803171 ~ 19803475 (+)
G106134 NA non-coding downstream 1709237 19957005 ~ 19995987 (+)
G106138 NA non-coding downstream 1730479 19978247 ~ 20014348 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 387305 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 1193114 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 2064974 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 2191276 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 2301866 15863032 ~ 15873489 (+)
AMCG00011328 NA other downstream 859505 19107273 ~ 19117369 (+)
G105916 NA other downstream 974287 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 1847461 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 2048243 20296011 ~ 20339325 (+)
G106242 NA other downstream 2113440 20361208 ~ 20367223 (+)

Expression


Co-expression Network