G105823



Basic Information


Item Value
gene id G105823
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18175668 ~ 18247770 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU132380
NNgagaaattgaacaggtgttcctaataatcctttaggtgagtgtataNNNNNNNNNNNNNCAAATGCCTGAACAATATGATAACAATTTTTCAATGAGAGAAAATTCAATCATACTGATGTTCATTAATCCTGTTGAACATCCATATCCTAGCATATTCTAAAGAGGCAAAAGCTGAggttaaaaatacagtaatttatcCATTAACAAATACACCTGGATTTATTGTGCAAAAGCTGTATTTAGTAGACATACTGTAGGATTCTAAGACTTTATTTTCCCTGTAGTTGACCCAAAAGTAAGATGTGCAACTTTCCTACAGTTGCTTAAAGACAAATTCAAACACTGATTTCCTTactattttaaatggaaattcaGTGTTGTTGTCCTGATGGAAACTATCTataattaatatagatataGCAAGGAATCTTCTGGTTGttgtttgtaataatatatacaagatattttacaatatgaatTATCCCACCATGACTGTggctacacaaaataaattaatatgtaaagtaaaataattaccTTCATGTTTACATCCAGCAATTTTCATTCAGTGCATTCATTCAGCAAATCTCTAGTGATACATGGCTATATTTTCAAAGCTTGATAAACTATATTCAATGAAATGACATAAATCTTGAGAGATTGTATTAAAATTCACAAAGAGGaaaaattaaactttccaaaATCTAAATAACATGGTATAACTCGAGTGACAAACAATACCACAAATATACTGTGACAGGTCACTCAAGTACAACATGGAATTTGTAAAGCGATgacattttgatgttttgtttacaatgctTTGATGAAATGCATCTCTGCATCATGCTACAGGAGCTAAAGCCATGCCATAAGtaccttaaataaaaaaagcttttatttcaaTCAATAGTAACCTTTTATagcttcaaataaaatacactttattgATTGATGCTATGTAGCAGATGGGTACATAATTGTACTGGGGACTAGGAATGTTTATAACACTATCCTATACATGATGACAGTAATTTCATAATGCTAGAGAGGAATTCAGGAATATCATTAGATaatcacaaaattaaaattaattccttGGAGaaatgtaaccttttttttctctgtgtatgaaaatgtaaagctaAACCTAAGATTCCTTTTGGCTTCATCCAATTTGTCTATTATAAAAATGTCAACAGGAGGTTTTAGTATACAATAAAAGCACCTGTTTCAGCAAATGGCACCTTAAACAATCATTATTAAAATCTGAGCAAAACAGAATTGCCAGGGCACATGCAATAATCTGTTATGCTacaatgtacatatacattagaGTCATTCAAGTTAATGTCAGTTGGGTATTAATGCTTTACAATAGTGTTTTACTTTGTATGCCTTTTAATAACAAGGAGGAGACATGTATGGAGGTTTGGGCTACATGTCAAAATAATGCCTAGAGCAttagtgaaaacaaaatgattttgtttcgTGAATATTGGATAGGTTTTGTAGATAAGTATATTTTAAGCTTGAATCTCTTAATAATAACCTCTACCTTGTTTATGCTTAAATACCAGAACATATACACCTAAATGTGTTAATACATAGTGCTTGAGTAATACTGATAATAGCATTAAGAGCATAATTTCAGTTACAAGAGACCAGGCAAAATTACTGGAGcattaaagttttgtttttcatattttttaaaaactttttttggtTTACATGTGTAACATCTTAAGAAgaagaattatttaaataaatcactaagcattttttgcattttacatgtatGTCTCATGGAAATTAAGAAATGTCTTGtggaaacatattttatttacagaaaaggGATACTTTAAGGCAGGGGATTTAATCGATTGGATTAATCAGATTGACACACTTgccataaatataaaaattatcaggaaaaataaaatagaaaaccatTAAATGGGAAGTAATAGCATATAGCATACATGCACTTTAGGAATAATCACTGAAAAGTGagataataattatttttattacatttgataaTGGATTAGTCGGCCCTAAACGATTAAAACCCCTTctcttgatatatatttttgcacacTGCAATTCAAATTTGCATGTCTTTTTAATGTTCAGGGATGTTTTCTGTTCGATGTACattggaattacattttttaataataatatatgttatataagtaAACATTGTTATGCTTAATACACTTCCTGGACCAActtcatattacatattaaatcaGGTAGAAAATATTGTAGTTAGTATTTGCTCAAGTGCTTTCATGTTATTGGATGTTAAATATTGATGATTATGTTATGTTCACATGATGAATTTTGAAGtgagaaaataactgaaataagtTTGCCTGGTGTTtgaaagaatgtatttatttcaatgtatatcTTCAGGTCTGCATCTTTTGTTGAGGAATAAACCTCTGGTATGTGTTGTATGTGTTCTGCACATTACACGTAACACTTTAAGGCCATGTAAACTTTCACTTACAATATCTAATAAAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU132380 True 2538 lncRNA 0.29 2 18175668 18247770

Neighbor


gene id symbol gene type direction distance location
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding downstream 382162 17786920 ~ 17793506 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding downstream 389826 17784040 ~ 17785842 (-)
AMCG00011311 NA coding downstream 402503 17761910 ~ 17773165 (-)
AMCG00011303 NA coding downstream 722900 17434502 ~ 17452768 (-)
AMCG00011304 NA coding downstream 779681 17379726 ~ 17395987 (-)
AMCG00011317 NA coding upstream 23642 18271412 ~ 18272204 (-)
AMCG00011330 NA coding upstream 868727 19116497 ~ 19121979 (-)
AMCG00011334 NA coding upstream 952726 19200496 ~ 19208029 (-)
AMCG00011333 NA coding upstream 962052 19209822 ~ 19217839 (-)
AMCG00011332 NA coding upstream 999854 19247624 ~ 19261952 (-)
G105795 NA non-coding downstream 142523 18032755 ~ 18033145 (-)
G105787 NA non-coding downstream 177943 17997438 ~ 17997725 (-)
G105786 NA non-coding downstream 368739 17806679 ~ 17806929 (-)
G105782 NA non-coding downstream 375381 17797443 ~ 17800287 (-)
G105774 NA non-coding downstream 419910 17754327 ~ 17755758 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 369079 18616849 ~ 18617084 (-)
G105918 NA non-coding upstream 985952 19233722 ~ 19244483 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding upstream 1128743 19376513 ~ 19376908 (-)
G105968 NA non-coding upstream 1149023 19396793 ~ 19480084 (-)
G106023 NA non-coding upstream 1340405 19588175 ~ 19588972 (-)
G105793 NA other downstream 175223 17999668 ~ 18000445 (-)
G105770 NA other downstream 424166 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 424569 17717626 ~ 17751099 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 1214599 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 2077489 16043371 ~ 16098179 (-)
G105890 NA other upstream 854523 19102293 ~ 19105269 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 1162598 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 1617844 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 4294879 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 4495660 22743430 ~ 22753616 (-)

Expression



Co-expression Network