G105840


Basic Information

Item Value
gene id G105840
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18240676 ~ 18244145 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132399
GACGTCTTTAAGTTAGGTTTTATTTCATGGAAATACAACATACTTTCACTTTAGCTTTCAtaggaccttttttgtttatttgtttttttttcaggacaTGATCACTTGAACAACAATATCATGAACAAAACTTTATGTCACAAATAGAGCCATGTTAACAATAAATTACACCTGCCATGCtaacttttaaaattacatgttttaaattaacatgttCATCCTTTATGGAACAATACAGTGGattcatgtattaataaatacaggtCAAGAAAACAgctactttttaaaaaacaatcattgtAAAACCagttaatactttaaaaaaaccgaaacaaacaaacaacaacaaaaaagagaaaaagagcgGAGAAACGCATTCAACAACGAATAAAACTTTACAACAAAAGCTGCCGTGCATTTTTCACAAGTGTGTTTaactattaataaaaaatggaattgctttcttttaaacataaaatgaaaaaatagatATTCTGGTAACACTGCTAAAGTAAAAAGTCAATACCCATTAATACTGTCTTATCCTTTTTCAGAGAATTGCTTCTCTAAATTAAGAGGAATCAATATATGAAATTGTGCCCTGCAGAAGGtcacaaaatgaatgcaaaacaatcTGACCCTTTTTTTCCACAAATACCATAAACAGGAATGAACAGATTATATGATCTTTGTCACTGCCTTCAGAGCTCATGTGGTCATTCTTTTAACATGATTAAGACCAGGGTTTGGTAtcataacattgtataagtaaGAGGTATGTACTTTGTTCAGTATTTTTACAGTTTGAGCACACATTTATAATGCAAATCCTTTCACAtctaaattgctttttttattttattttatacaatgttataatcTGATAGTTGTAAAAAAAAGAGATGTCAGTGAAACTGCAAATATTAGATATTTGCATAAATGGAATGcacctttgttttttgttgttgttattttagcaAAAAAGCTTACAAGACTTCACTTTCTCAAATACCAGTGAAAAACACACCAAAGCTGAAAGGGGCATTCACACTCTCTACTAAACACTGGtaagaaatgacaaaaaaactaaatactgtagtaaaatgtaaaattgtgtaTATAAAGTGTATTTCTGAATGGTTTTCCCGATtagttatgcatttatttttaaatgtaaaaggtaGCACATACTGAAACACTTAAACATAGGgatgttatattaattaaagcaTCCATTGATTAGGGTAgagttttttatttctaaatacagtAACCTATATTTGAAAAGGGGGTGGGCAGGATGGCCAACCATTTCCACAAAACATCACCTCTTTCTGAGTTAACGTGCTGCATATTTATCAGTGCTTAAAGTGAGAAAACATTTCTAGGTGATCACTggttcttttgtttcttctttacAACAGGGTGAATggaacaggttttattttgatgtaacTCCCAGCAGAAGTAGTGCTCCTCAAATGGAGAATTACACCAAACATATCTGAAACTCATACTACTCTCATTTACTGAGCTGTCTTTTGAGCAGATTTATTAAAACCACCTTGTTAGGAAAGAAAACCTAATTCCAAATTCAGAATACAAAtgttagatttagttttagcaGGTAGAAATCATTGGTTCCATACCTCAGACAGAAAGGAAGTACAGACAGTGGTTATCACAGAATCTCAGTGATAATTGCATTGACATTGACTGCTTTCCTTGACTCCTCTAACTGGTTAGAAATACAGCTAGAGGGCCTTTCAGTTTCAGTGTATATCTTCTTCACAGGGTGTGTTATGGTTACTAAGAGGCAGATTTAGTTGAGCATTAAACTACTGGGCCTAAAAGGTGTGGGGCTAGATATAAAATAACCAAGAAAATAAGCCTGGTACAGCTTTCGGAGCCCCCGAAGAAATCTATTAttcaagaataaaataaactggaagTTAACGGTTGTCAATAATGTGTAGAATTACTTTGTAAAGAAAAGGCAGCTGTCTTGTTACACTTGTGAAGAACTTAAATCAGAGGGAGGCATGCAGACCAATAAGTgaaactaaatgtattattctaacaaattcaatatttacattaagtTGTTCTTTAAACCACAATAATATACatgaattgattaaaaataatttattttctcattcttgAAAAGATTAAAGAGACAAAAAACCTTTgagtgatggggggggggtagtcttttttcttaatttcaattCTGACATTAGTACTGACCCATTGACACATTTCCCTCCAGCTAAATGTTCAGGGTTCTGAAAGACTGTTTCCAATGCTAGCAGAACCTTAATaaagtgtaatatataaaagcaaacaTCAAGGTCAAACTGTGGATGCACCTTAATGATATTATATTGTCAAGTAAAACATTTCCACCCTTTAATGTCCCTAAATATTCTTGGTCTCTGCTGCTCTTCAATAGggtcaattcaatttttatgtttattttggtaaatCTGTTATTCAACAGGTTGGAAGAAATTAATGTcacagaaaacatgtattaagTTGCCTGTTTAAAATGGCTGTCGTTGTATTTAAAAGTTGATTTAGTTCAGTGACAATAAGGCCACTGAAGACATACTGATTTAAAGCAATATTTCTTGTGAAGAACCACATTTCTGTTAAAGGGaaacctttaaaatgttctgctgAAATTGCCTGTGAACATGATGCTGACTGTAACACACAAGGATTGAGGTATAATACTTCTGCAGTCTACAAAGGAGGAAGTAAGTAACTAATTGAAGGCTTAAGGGGCTGagaataatattgtatttaccCTTTGTAGGTAATGACCACTGAAAATTGCTTGCAATGACTGAAGATCAGCAGTCGCAGTTCTTTCCCTGCACCATTAAACTGCAAATTCAAAATGAGAGCATGCGATGATTGGATGAAAATATCAGCCTAGCATTCAAGGCAAAAGGTCGCAACTGTATTTACGGGATACGTAAATCTCGAATACCAATTTGCCAAAAACCAGGTGAAGAGTTTGCTATGTTAAAGGCTTGCAGGGGGGCTTTCTTCAACAGGTGGTGGCCAGGGACTGGTGTATAGGCGGCTGGAAACAGCGCACGTGTTCTACTGTTGAACTGTCCGTCTCTACAGCCTTCATGTACTTGTTTAAGATGGCAAAGATCTCATTGTTTAATATCTGGTATTTTCTGATGCGGTCAGCCATTTTCTTCAAGGGCTAGaaaaggaagaacaaaaaacagtggGGTGTCATTATGTCACTATAGTTTCGTTTGGCAAAGATACAAGTCATAATATGAAACCATGAATTGTTTCCAAAAAATGTTCCATCCTAGTGAAAATGATTCATCATAAAGCCACTCAAAAAATGCAGATTACCATCTTTTCATGCTGTGTGAGAGACGATTATTAAGTCATTATGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132399 True 3435 lncRNA 0.34 2 18240676 18244145

Neighbor

gene id symbol gene type direction distance location
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding downstream 43425 18196541 ~ 18197251 (-)
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding downstream 447170 17786920 ~ 17793506 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding downstream 454834 17784040 ~ 17785842 (-)
AMCG00011311 NA coding downstream 467511 17761910 ~ 17773165 (-)
AMCG00011303 NA coding downstream 787908 17434502 ~ 17452768 (-)
AMCG00011317 NA coding upstream 27267 18271412 ~ 18272204 (-)
AMCG00011330 NA coding upstream 872352 19116497 ~ 19121979 (-)
AMCG00011334 NA coding upstream 956351 19200496 ~ 19208029 (-)
AMCG00011333 NA coding upstream 965677 19209822 ~ 19217839 (-)
AMCG00011332 NA coding upstream 1003479 19247624 ~ 19261952 (-)
G105795 NA non-coding downstream 207531 18032755 ~ 18033145 (-)
G105787 NA non-coding downstream 242951 17997438 ~ 17997725 (-)
G105786 NA non-coding downstream 433747 17806679 ~ 17806929 (-)
G105782 NA non-coding downstream 440389 17797443 ~ 17800287 (-)
G105774 NA non-coding downstream 484918 17754327 ~ 17755758 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 372704 18616849 ~ 18617084 (-)
G105918 NA non-coding upstream 989577 19233722 ~ 19244483 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding upstream 1132368 19376513 ~ 19376908 (-)
G105968 NA non-coding upstream 1152648 19396793 ~ 19480084 (-)
G106023 NA non-coding upstream 1344030 19588175 ~ 19588972 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 49481 18180646 ~ 18191195 (-)
G105793 NA other downstream 240231 17999668 ~ 18000445 (-)
G105770 NA other downstream 489174 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 489577 17717626 ~ 17751099 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 1279607 16943932 ~ 16961069 (-)
G105890 NA other upstream 858148 19102293 ~ 19105269 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 1166223 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 1621469 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 4298504 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 4499285 22743430 ~ 22753616 (-)

Expression


Co-expression Network