G105858 (LOC105030512,LOC106609167,LOC106569888)


Basic Information

Item Value
gene id G105858
gene name LOC105030512,LOC106609167,LOC106569888
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18616850 ~ 18617065 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132421
cagtggcagaccacgtgtaacaacacctggaCAGGATcagtacatccgaatatcacacctgcgggacaggtacaggatggcaacaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtccttaccagacatcaccg

Function

NR:

description
PREDICTED: uncharacterized protein LOC105030512

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132421 True 216 lncRNA 0.55 1 18616850 18617065

Neighbor

gene id symbol gene type direction distance location
AMCG00011319 NA coding upstream 348193 18259800 ~ 18268657 (+)
AMCG00011322 NA coding upstream 364479 18245569 ~ 18252371 (+)
AMCG00011321 cyfip2,LOC107561176,LOC107550751,LOC107752024,LOC107664348,LOC107744558 coding upstream 372705 18220046 ~ 18244145 (+)
AMCG00011323 NA coding upstream 404987 18200641 ~ 18211863 (+)
AMCG00011320 gria2,LOC107575061,LOC108411138 coding upstream 518777 18092116 ~ 18098073 (+)
AMCG00011325 LOC105903358 coding downstream 185573 18802638 ~ 18822410 (+)
AMCG00011326 si:dkey-34l15.2,tenm2,LOC107670182,LOC107707213,LOC101076136 coding downstream 330287 18947352 ~ 18999884 (+)
AMCG00011327 si:dkey-34l15.2,LOC107707213 coding downstream 400157 19017222 ~ 19042201 (+)
AMCG00011329 LOC108431127,LOC107658040,LOC107707213 coding downstream 437069 19054134 ~ 19090434 (+)
AMCG00011331 LOC103390990,LOC105893714,LOC101160174,LOC104927068,LOC102798575 coding downstream 533417 19150482 ~ 19151729 (+)
G105811 NA non-coding upstream 369082 18175355 ~ 18247768 (+)
G105794 NA non-coding upstream 583825 18032755 ~ 18033025 (+)
G105792 NA non-coding upstream 616507 17999636 ~ 18000343 (+)
G105776 phykpl,LOC100691570 non-coding upstream 848629 17765891 ~ 17768221 (+)
G105769 NA non-coding upstream 865366 17751250 ~ 17751484 (+)
G106022 NA non-coding downstream 971128 19588193 ~ 19588973 (+)
G106071 NA non-coding downstream 1186106 19803171 ~ 19803475 (+)
G106134 NA non-coding downstream 1339940 19957005 ~ 19995987 (+)
G106138 NA non-coding downstream 1361182 19978247 ~ 20014348 (+)
G106277 NA non-coding downstream 1998373 20615438 ~ 20615641 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 828800 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 1634609 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 2506469 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 2632771 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 2743361 15863032 ~ 15873489 (+)
AMCG00011328 NA other downstream 490208 19107273 ~ 19117369 (+)
G105916 NA other downstream 604990 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 1478164 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 1678946 20296011 ~ 20339325 (+)
G106242 NA other downstream 1744143 20361208 ~ 20367223 (+)

Expression


Co-expression Network