G105859 (LOC105030512,LOC106609167,LOC106569888)


Basic Information

Item Value
gene id G105859
gene name LOC105030512,LOC106609167,LOC106569888
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18616849 ~ 18617084 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132422
ccataggcgacgttgttgccggtgatgtctggtaaggacctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgcggacagtctgagcactgatggagggattgtgcgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatattcggatgtactgATCCTGtccaggtgttgttacacgtggtctgccactgc

Function

NR:

description
PREDICTED: uncharacterized protein LOC105030512

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132422 True 236 lncRNA 0.55 1 18616849 18617084

Neighbor

gene id symbol gene type direction distance location
AMCG00011317 NA coding downstream 344645 18271412 ~ 18272204 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding downstream 419598 18196541 ~ 18197251 (-)
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding downstream 823343 17786920 ~ 17793506 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding downstream 831007 17784040 ~ 17785842 (-)
AMCG00011311 NA coding downstream 843684 17761910 ~ 17773165 (-)
AMCG00011330 NA coding upstream 499413 19116497 ~ 19121979 (-)
AMCG00011334 NA coding upstream 583412 19200496 ~ 19208029 (-)
AMCG00011333 NA coding upstream 592738 19209822 ~ 19217839 (-)
AMCG00011332 NA coding upstream 630540 19247624 ~ 19261952 (-)
AMCG00011336 LOC107715168,LOC103027224,LOC108430945,LOC108274535,LOC103354395 coding upstream 679000 19296084 ~ 19307708 (-)
G105823 NA non-coding downstream 369079 18175668 ~ 18247770 (-)
G105840 NA non-coding downstream 372704 18240676 ~ 18244145 (-)
G105795 NA non-coding downstream 583704 18032755 ~ 18033145 (-)
G105787 NA non-coding downstream 619124 17997438 ~ 17997725 (-)
G105786 NA non-coding downstream 809920 17806679 ~ 17806929 (-)
G105918 NA non-coding upstream 616638 19233722 ~ 19244483 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding upstream 759429 19376513 ~ 19376908 (-)
G105968 NA non-coding upstream 779709 19396793 ~ 19480084 (-)
G106023 NA non-coding upstream 971091 19588175 ~ 19588972 (-)
G106163 NA non-coding upstream 1323945 19941029 ~ 20014274 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 425654 18180646 ~ 18191195 (-)
G105793 NA other downstream 616404 17999668 ~ 18000445 (-)
G105770 NA other downstream 865347 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 865750 17717626 ~ 17751099 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 1655780 16943932 ~ 16961069 (-)
G105890 NA other upstream 485209 19102293 ~ 19105269 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 793284 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 1248530 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 3925565 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 4126346 22743430 ~ 22753616 (-)

Expression


Co-expression Network