G105918


Basic Information

Item Value
gene id G105918
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19233722 ~ 19244483 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132493
GGGGATTCTGGTTGGTATGTTGCTGAAATTATGAATGGACAGCAAGGAGTGCTCTGGGAGAGGCAAGGATTCACTAACAGAATGAAGAGTGGGAACCTGTGAGCTGCATATTCTCCGGTGTTGTGGAGAAAGATAATACAAGATAATTACCAGGCTAACAGGCAAAGAAAGCAGGTTAATAGTCAAAACTATCTTCAATCAAGTTATTCGAACAGAAAAAAACCAACGATGGACCCAAAGTGCCAATCTTCTTCTCCTCAGAAACAGACTGTGAAAAACAGATCTAAATCCACCGAGGAGATTCAGCAAGCTAAAAAGGCCTTTCACACGCCCCAGAAATCCCTGCCAGGGAAGACGGAACTGGAAAAACTGAAGGAGACCTCTGAATCCTCTGAGACGTCATCATCATCTGAGGAGTTCAAATGAGTGGGAGATGGAAACCGAATGACTGGTTGGGTTCAAGAGATTTGTAGCAGCTAATGAATCATCACTGGAAGCATTTCTCTCGTAATCCACTcgaaacacacagcacaaggGTGTCATATAAATTGGAATAGTTTGGCCTTGAACTCCCCATTGTCGTCACCTTGTTAAACACAACACTGGTGTAAAGTTAATGTAATGTCAGTCCACTGTACATAAGAAGTAAATGTGCATTTACAATAAAGCAacattgtagttttttttgttttgtttttggatgagGCTACTGAAATAAATCGTAATGAGCAAGTTTGGTTTTATCCTTCCTTCTGCCTTGATAGTCAGGGTAAATCTTAATACCGTATGGTATAGCTCTGGGGGCACCTGTTAAACAGTTTGGTTCCATGAGATTTCATTAAACatgtacagagagagaagaaTCAAAATGACTAACCTAACCTGTACTTTATCACAGGAcaattagtttttaatattgttgttttgcttaacaatattatttcattattattattttttgtttcattattatgtaGATAATTATTTGATGTCTTGAAGAAACGAAGGACTTGAAATTATTAAGTGCAGGAGTTTACATAATTCAGAAAACCATAACTGGAGGATGATGCACAATATactatttgtgtaattaaatttgattgtttttcagtttgtaataataataataataaacaaacaaacaaacagttatGTTggttaaattgaaatgtaaagaaactgGCAGAATAGAAGAATGCTCTCATATTATATTCTCCAGGGTTTGAATGTTTAGGTTATTTCACTATTGAGAAAAATATGATCTACGTCAGACATAGTGCCAgtgattcattaatttattttaatggaattaaaatcatacatttatatagtattatttttgtttatgctgGAATGTGTAACTTTTGAAGGTCTCTAatagttttataatatataataccaTTGATTGACTTAATCTGCCATGCACCTGAACATGCTTTAATGCCTTAGAATATGAATTAAACTGTGCACATTTAATATGTTGAGTATGTGTTCTGAACAGTAAAAc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132493 True 1507 lncRNA 0.35 5 19233722 19244483

Neighbor

gene id symbol gene type direction distance location
AMCG00011333 NA coding downstream 15883 19209822 ~ 19217839 (-)
AMCG00011334 NA coding downstream 25693 19200496 ~ 19208029 (-)
AMCG00011330 NA coding downstream 111743 19116497 ~ 19121979 (-)
AMCG00011317 NA coding downstream 961518 18271412 ~ 18272204 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding downstream 1036471 18196541 ~ 18197251 (-)
AMCG00011332 NA coding upstream 3141 19247624 ~ 19261952 (-)
AMCG00011336 LOC107715168,LOC103027224,LOC108430945,LOC108274535,LOC103354395 coding upstream 51601 19296084 ~ 19307708 (-)
AMCG00011335 rbm22,LOC107685490 coding upstream 69344 19313827 ~ 19322039 (-)
AMCG00011345 NA coding upstream 193740 19438223 ~ 19444151 (-)
AMCG00011349 NA coding upstream 254877 19499360 ~ 19513320 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 616638 18616849 ~ 18617084 (-)
G105823 NA non-coding downstream 985952 18175668 ~ 18247770 (-)
G105840 NA non-coding downstream 989577 18240676 ~ 18244145 (-)
G105795 NA non-coding downstream 1200577 18032755 ~ 18033145 (-)
G105787 NA non-coding downstream 1235997 17997438 ~ 17997725 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding upstream 132030 19376513 ~ 19376908 (-)
G105968 NA non-coding upstream 152310 19396793 ~ 19480084 (-)
G106023 NA non-coding upstream 343692 19588175 ~ 19588972 (-)
G106163 NA non-coding upstream 696546 19941029 ~ 20014274 (-)
G106183 NA non-coding upstream 826999 20071482 ~ 20115868 (-)
G105890 NA other downstream 128453 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1042527 18180646 ~ 18191195 (-)
G105793 NA other downstream 1233277 17999668 ~ 18000445 (-)
G105770 NA other downstream 1482220 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 1482623 17717626 ~ 17751099 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 165885 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 621131 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 3298166 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 3498947 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3808830 23053313 ~ 23060966 (-)

Expression


Co-expression Network