G105967 (ndst1,LOC106611870,LOC107094997)


Basic Information

Item Value
gene id G105967
gene name ndst1,LOC106611870,LOC107094997
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19376513 ~ 19376908 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132565
cagggagagacgcTTGCCTGTCAGGAAGGACACGGCGTCCACAAAGACCAGTTTGTGCAGCCAGAAGTTGAGGTTGTTGCCGAAGAGGACACGCTGGATGCCGTCGTGGAGCCCCAGGTCCTGCACCACGGAGGTGTGCAGCGCGGCACTCACGCCCAGCTGGGGGATGCTCTCTGCAGACTTGGTCTTGGCCAGCAGCACGGGCTCGTAGGTGGAGTGGTTGGACTGGAAGACGGTCCAGTCATCGCCAGGCAATAGGCCCTGCTCGACCTCGTGAGCTTTTGTGATGAACAGGAGGGGGGACTTGGAGTTCACACTGCAGTCCTTCAAGCCCAGGTTGGAGTGCAAAAACAGCGGGAAGCCCTTTAACTGGGCACTGAGCAAACTGTTCTCATT

Function

symbol description
ndst1 Predicted to enable [heparan sulfate]-glucosamine N-sulfotransferase activity and deacetylase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to act upstream of or within several processes, including animal organ development; positive regulation of signal transduction; and protein sulfation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
PREDICTED: transmembrane protein 126A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132565 True 396 lncRNA 0.59 1 19376513 19376908

Neighbor

gene id symbol gene type direction distance location
AMCG00011335 rbm22,LOC107685490 coding downstream 54474 19313827 ~ 19322039 (-)
AMCG00011336 LOC107715168,LOC103027224,LOC108430945,LOC108274535,LOC103354395 coding downstream 68805 19296084 ~ 19307708 (-)
AMCG00011332 NA coding downstream 114561 19247624 ~ 19261952 (-)
AMCG00011333 NA coding downstream 158674 19209822 ~ 19217839 (-)
AMCG00011334 NA coding downstream 168484 19200496 ~ 19208029 (-)
AMCG00011345 NA coding upstream 61315 19438223 ~ 19444151 (-)
AMCG00011349 NA coding upstream 122452 19499360 ~ 19513320 (-)
AMCG00011348 NA coding upstream 140523 19517431 ~ 19539640 (-)
AMCG00011350 LOC105888595 coding upstream 173319 19550227 ~ 19570328 (-)
AMCG00011355 NA coding upstream 344246 19721154 ~ 19726365 (-)
G105918 NA non-coding downstream 132030 19233722 ~ 19244483 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 759429 18616849 ~ 18617084 (-)
G105823 NA non-coding downstream 1128743 18175668 ~ 18247770 (-)
G105840 NA non-coding downstream 1132368 18240676 ~ 18244145 (-)
G105795 NA non-coding downstream 1343368 18032755 ~ 18033145 (-)
G105968 NA non-coding upstream 19885 19396793 ~ 19480084 (-)
G106023 NA non-coding upstream 211267 19588175 ~ 19588972 (-)
G106163 NA non-coding upstream 564121 19941029 ~ 20014274 (-)
G106183 NA non-coding upstream 694574 20071482 ~ 20115868 (-)
G106212 NA non-coding upstream 840343 20217251 ~ 20217476 (-)
G105890 NA other downstream 271244 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1185318 18180646 ~ 18191195 (-)
G105793 NA other downstream 1376068 17999668 ~ 18000445 (-)
G105770 NA other downstream 1625011 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 1625414 17717626 ~ 17751099 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 33460 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 488706 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 3165741 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 3366522 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3676405 23053313 ~ 23060966 (-)

Expression


Co-expression Network