G106183


Basic Information

Item Value
gene id G106183
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20071482 ~ 20115868 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132867
GGCGCTTTAGTTAACAAAACACGTTGCTGGTATTTAATGATTTcaatataaattacaatgttgtttcagtgtgaaacaTAAAATGTTCTTACATACTGGATTATTTTCCACGAATGTATGTAACTAAATTATACTGATCAAACCCACAAACACCGGGGTGAAGGAAACagacaaattacacatttctctaaaaatctatttaaaactGTCTCATTACAAGAAACATTATCTTACCTCCAAAAACTGAGATCTCATTTGATTTCCTTTCAGAGTGTCAGTCCCAGAAATACTAATCAGATCTCCATCTTGAGGTGGAAACGGAGAGTTAAAAACCACGACGTCACTCTTCAGGGTGTCTGAGCTGAAACACACGTCATACTGCTGAGTAGTTTTAGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATTGGGGGGCTGTACCCGCTGAAACTGTCATCCCTCCTGTGGCATTTCACAACTATTAAACTGAGGAGACTCAGCACAAATATCACTGACACTGAGACAATGGCGATGAGCAAATAgagatttaaatttgaaaacgTTTCATCGCTTTTTGGCCGTTGCCTGTGTTCCGACTGTATTTCAGGCATATTTTCGACGACCACAACATCAAGAGTAACAGTTGATGACAAAGGTGGTTCACCGTTATCAGTAATCAAAATCACAAGAGGGTGTGGTTttatgtcattttcatttagaCGTCGTTTAGTCCTTATTTCTCCACTACTGGTACCGATTCTGAATGTGTCCGTTCCCTTGGGCTCAACAATGTGATAAGAAAGCAGCGCATTGTATCCACAATCCGCATCCACAGCCCTGATCTTCGCCACAAAGTATCCCGCTTCAGCAGAATAAGGGATGTGCTCAGTGTTACCAGAGCCGTGCTCAGAGTAGGGAGGCAGGATCCCGGGGCTGTTGTCATTCTCATCCAGGATAAAAACGCTCACAGTGACGTTGCTGCTTTGTGGAGGGACACCGGCATCAGTGGCCTGAACCTGAAACTGGAACGTTTTCACCTCCTCATAATTAAAAGTCTGCATGCTGTATATATCTCCACTGACAGAGTTCACGCTTATAATAGAATAAATATGTAGTGCCTTGGCAGAACTGTCCAATAAAGAATATGTTACTCgggcattttcatttaaatccgGATCAAAAGCAGACAAGGAATATATAATTGTTCCCGTG
>TU132868
GAGTGTCAGTCCCAGTAATACTAATCAGATCCCCATCTTGAGGCGGAAACGGTGAGTTAAAAACCACGACGTCACTCTTCAGGGTGTCTGAGCTGAAACACACGTCATACTGCTGAGTAGTTTTAGAGTAAGACCAGCTCCCTTCAGGGTGTGTGGTGATCATTGGGGGGCTGTACCCGCTGAAACTGTCATCCCTCCTGTGGCATTTCACAACTATTAAACTGAGGAGACTCAGCACAAATATCACTGACACTGAGACAATGGCGATGAGCAAATAgagatttaaatttgaaaacgTTTCATCGCTTTTTGGCCGTTGCCTGTGTTCCGACTGTATTTCAGGCATATTTTCGACGACCACAACATCAAGAGTAACAGTTGATGACAAAGGTGGTTCACCGTTATCAGTAATCAAAATCACAAGAGGGTGTGGTTttatgtcattttcatttagaCGTCGTTTAGTCCTTATTTCTCCACTACTGGTACCGATTCTGAATGTGTCCGTTCCCTTGGGCTCAACAATGTGATAAGAAAGCAGCGCATTGTATCCACAATCCGCATCCACAGCCCTGATCTTCGCCACAAAGTATCCCGCTTCAGCAGAATAAGGGATGTGCTCAGTGTTACCAGAGCCGTGCTCAGAGTAGGGAGGCAGGATCCCGGGGCTGTTGTCATTCTCATCCAGGATAAAAACGCTCACAGTGACGTTGCTGCTTTGTGGAGGGACACCGGCATCAGTGGCCTGAACCTGAAACTGGAACGTTTTCACCTCCTCATAATTAAAAGTCTGCATGCTGTATATATCTCCACTGACAGAGTTCACGCTTATAATAGAATAAATATGTAGTGCCTTGGCAGAACTGTCCAATAAAGAATATGTTACTCgggcattttcatttaaatccgGATCAAAAGCAGACAAGGAATATATAATTGTTCCCGTG
>TU132869
CGTCTGCAGGTGGAAAAGACGAATTAAAAACCACGACGTCACTCTTCAGGGTGTCTGAGCTGAAACACACGTCATACTGCTGAGTAGTTTTAGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATTGGGGGGCTGTACCCGCTGAAACTGTCATCCCTCCTGTGGCATTTCACAACTATTAAACTGAGGAGACTCAGCACAAATATCACTGACACTGAGACAATGGCGATGAGCAAATAgagatttaaatttgaaaacgTTTCATCGCTTTTTGGCCGTTGCCTGTGTTCCGACTGTATTTCAGGCATATTTTCGACGACCACAACATCAAGAGTAACAGTTGATGACAAAGGTGGTTCACCGTTATCAGTAATCAAAATCACAAGAGGGTGTGGTTttatgtcattttcatttagaCGTCGTTTAGTCCTTATTTCTCCACTACTGGTACCGATTCTGAATGTGTCCGTTCCCTTGGGCTCAACAATGTGATAAGAAAGCAGCGCATTGTATCCACAATCCGCATCCACAGCCCTGATCTTCGCCACAAAGTATCCCGCTTCAGCAGAATAAGGGATGTGCTCAGTGTTACCAGAGCCGTGCTCAGAGTAGGGAGGCAGGATCCCGGGGCTGTTGTCATTCTCATCCAGGATAAAAACGCTCACAGTGACGTTGCTGCTTTGTGGAGGGACACCGGCATCAGTGGCCTGAACCTGAAACTGGAACGTTTTCACCTCCTCATAATTAAAAGTCTGCATGCTGTATATATCTCCACTGACAGAGTTCACGCTTATAATAGAATAAATATGTAGTGCCTTGGCAGAACTGTCCAATAAAGAATATGTTACTCgggcattttcatttaaatccgGATCAAAAGCAGACAAGGAATATATAATTGTTCCCGTG
>TU132870
CAAAATTCTGGTAGATCGCTTGTTTGCGTTTAACAGAGTCAGTCCCATTAATACTAATCAGATCTCCATCTTGAGGTGGAAACGGTGCGTTAAAAACCACGACGTCACTCTTCAGGGTGTCTGAGCTGAAACACACGTCATACTGCTGAGTAGTTTTAGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATTGGGGGGCTGTACCCGCTGAAACTGTCATCCCTCCTGTGGCATTTCACAACTATTAAACTGAGGAGACTCAGCACAAATATCACTGACACTGAGACAATGGCGATGAGCAAATAgagatttaaatttgaaaacgTTTCATCGCTTTTTGGCCGTTGCCTGTGTTCCGACTGTATTTCAGGCATATTTTCGACGACCACAACATCAAGAGTAACAGTTGATGACAAAGGTGGTTCACCGTTATCAGTAATCAAAATCACAAGAGGGTGTGGTTttatgtcattttcatttagaCGTCGTTTAGTCCTTATTTCTCCACTACTGGTACCGATTCTGAATGTGTCCGTTCCCTTGGGCTCAACAATGTGATAAGAAAGCAGCGCATTGTATCCACAATCCGCATCCACAGCCCTGATCTTCGCCACAAAGTATCCCGCTTCAGCAGAATAAGGGATGTGCTCAGTGTTACCAGAGCCGTGCTCAGAGTAGGGAGGCAGGATCCCGGGGCTGTTGTCATTCTCATCCAGGATAAAAACGCTCACAGTGACGTTGCTGCTTTGTGGAGGGACACCGGCATCAGTGGCCTGAACCTGAAACTGGAACGTTTTCACCTCCTCATAATTAAAAGTCTGCATGCTGTATATATCTCCACTGACAGAGTTCACGCTTATAATAGAATAAATATGTAGTGCCTTGGCAGAACTGTCCAATAAAGAATATGTTACTCgggcattttcatttaaatccgGATCAAAAGCAGACAAGGAATATATAATTGTTCCCGTG

Function

NR:

description
PREDICTED: fructose-bisphosphate aldolase B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132867 True 1216 lncRNA 0.42 2 20071482 20115868
TU132868 False 947 lncRNA 0.45 3 20071482 20086764
TU132869 False 914 lncRNA 0.45 2 20071482 20095242
TU132870 False 980 lncRNA 0.44 2 20071482 20112210

Neighbor

gene id symbol gene type direction distance location
AMCG00011362 NA coding downstream 158577 19909942 ~ 19912905 (-)
AMCG00011354 arsi,LOC106604849 coding downstream 247330 19817467 ~ 19824152 (-)
AMCG00011357 camk2a,LOC106563741,LOC106602935 coding downstream 312439 19730492 ~ 19759043 (-)
AMCG00011355 NA coding downstream 345117 19721154 ~ 19726365 (-)
AMCG00011350 LOC105888595 coding downstream 501154 19550227 ~ 19570328 (-)
AMCG00011366 diaph1 coding upstream 261074 20376942 ~ 20384649 (-)
AMCG00011367 NA coding upstream 270296 20386164 ~ 20390745 (-)
AMCG00011369 NA coding upstream 318590 20434458 ~ 20438919 (-)
AMCG00011368 NA coding upstream 324606 20440474 ~ 20477081 (-)
AMCG00011370 trpc7,trpc7b,LOC107596405,LOC107654649,LOC108274464,LOC105903241,LOC103471336 coding upstream 383254 20499122 ~ 20544751 (-)
G106163 NA non-coding downstream 57208 19941029 ~ 20014274 (-)
G106023 NA non-coding downstream 482510 19588175 ~ 19588972 (-)
G105968 NA non-coding downstream 591398 19396793 ~ 19480084 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding downstream 694574 19376513 ~ 19376908 (-)
G105918 NA non-coding downstream 826999 19233722 ~ 19244483 (-)
G106212 NA non-coding upstream 101383 20217251 ~ 20217476 (-)
G106224 NA non-coding upstream 156195 20272063 ~ 20276305 (-)
G106266 NA non-coding upstream 370403 20486271 ~ 20488188 (-)
G106278 NA non-coding upstream 499570 20615438 ~ 20615642 (-)
G106300 NA non-coding upstream 796051 20911919 ~ 20912138 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 203580 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 658467 19410368 ~ 19413015 (-)
G105890 NA other downstream 966213 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1880287 18180646 ~ 18191195 (-)
G105793 NA other downstream 2071037 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 2426781 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 2627562 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 2937445 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 3277236 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 3697989 23813857 ~ 23817543 (-)

Expression


Co-expression Network