G106266


Basic Information

Item Value
gene id G106266
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20486271 ~ 20488188 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132972
AGACATTCTGCACAGCCCTGAAATTGTTCCAGCCACTTTGTTTCAAATGGAGAGCTGctgtgaaaacagaaaaaaagaaaaagaaatccgTCACATGCTTTCACACATCGGTGTTCCTGGAAGGCTCCCTCGGTTCAGATGCACAATTCAGGTTTCTCTGGGTCTGAGTGAGCAGGTTAGCCAGTGATCTGCAAAACCAGGGGACAAGGCAGAGGGTATACACCAATCTGTTTGTTCCAGCTGCTGACATCCACCAAAACCCAGAGCCTCCAAGAGTGAAACGCATTGCATGGCCCTGGACAGCACTACAGCAGGAGAGGAATGAAGCCCAGCCACTCCAGATGAACATGGAAATCCATGTGTTGCAGCCATGAGCTCAGTCTGCGCCACGGAGAGCGTGTGAAGGGGATATTCCCACACAGGGAAGGCAGCACAGCAGTTTGATTTCTCTGATTCATGTTCTGCTTTCAAAAGCCAAGCCTGCAATCTGCGGCAATCGGGTTTGTTTCCCTTGGGATTAAGTTGTCACAGATTCCCTGGAGGGGCAACGGAGACGCATGCACTTCTGTGCCTTATTTACCCCAGAGAAGCTGCTGGGGAATGAGCAATAGTGAAAGTTTAAAGTTATAACTTAAACATATGTAGCATTTGGAGACGGGTATGGTTTGCAGGAAAGTTGTACTTTGCGGGTTTCCATTGCCCATAAACGCCAGTGTGTGTACCGCAAGGACAATGTGGGATATCAAGATGCTCATCCGAGGATTTAAAATACTGCGTTACTAACGGGGAGGTAGGATTTACAGCAGAAACGGACTGACTTGCTCTAGTTATTATTAGAGATGCGTTACATTATTTGACGACTGGGACACTATAGACCGGCTGCCCTTTGAATAATGCAAACAAGATTTCACCTCCGTCTACCTCACCTACTGCCTGGATCTGATATCTTCATAGTCTGCGCAGCACTGCAAttggAAATTGATTAACAGAAGAGGAGGCATGTTAAGACAAATGTTAATAAACTCTACTGCTGCCTCAAGCTTTGAACTCATGGCCCACACCAATGCACCGTCCTTAAATATATCCCAGGGACCCATCAGTGTGGCAGGCTTCCTCAGACCAACTGGCAGAGGATTGAGAGAAGGAGAATTAAACAAACCCGATTTAGTGACCTATGTGATtatattctttgttttatttctgctggTTTTGGTAATTGTGCTTTTTATCAATTGCCAGCTGAGGAATTCCTTCTTTGCGACCATGCCTTATGACAGGTCGTTAAGAGAAGCAAGGAGCTCCTGGAAAAGTGCAAGACTGTGAAATACACTCAGTGGATTAAACAGAGATCCTGGATGTTTCCTCTTCTGTAAAGGCTCAGCGGACCTGTACACTTGTATACTTGGGGTAATTATCATCACATGggtaaaatgtttgttcatcTTGTATGAGTTGCAGTATGCTCTGCAATGTacagtgctttattttcagATCTGGTTTAATGT

Function

GO: NA

KEGG:

id description
ko04979 Cholesterol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU132972 True 1505 lncRNA 0.45 2 20486271 20488188

Neighbor

gene id symbol gene type direction distance location
AMCG00011368 NA coding downstream 9190 20440474 ~ 20477081 (-)
AMCG00011369 NA coding downstream 47352 20434458 ~ 20438919 (-)
AMCG00011367 NA coding downstream 95526 20386164 ~ 20390745 (-)
AMCG00011366 diaph1 coding downstream 101622 20376942 ~ 20384649 (-)
AMCG00011362 NA coding downstream 573366 19909942 ~ 19912905 (-)
AMCG00011370 trpc7,trpc7b,LOC107596405,LOC107654649,LOC108274464,LOC105903241,LOC103471336 coding upstream 10934 20499122 ~ 20544751 (-)
AMCG00011371 spock1,LOC106604788,LOC106611816 coding upstream 157315 20645503 ~ 20660607 (-)
AMCG00011372 NA coding upstream 225750 20713938 ~ 20728141 (-)
AMCG00011375 NA coding upstream 404402 20892590 ~ 20907111 (-)
AMCG00011376 NA coding upstream 470676 20958864 ~ 20966129 (-)
G106224 NA non-coding downstream 209966 20272063 ~ 20276305 (-)
G106212 NA non-coding downstream 268795 20217251 ~ 20217476 (-)
G106183 NA non-coding downstream 370403 20071482 ~ 20115868 (-)
G106163 NA non-coding downstream 471997 19941029 ~ 20014274 (-)
G106023 NA non-coding downstream 897299 19588175 ~ 19588972 (-)
G106278 NA non-coding upstream 127250 20615438 ~ 20615642 (-)
G106300 NA non-coding upstream 423731 20911919 ~ 20912138 (-)
G106340 NA non-coding upstream 463572 20951760 ~ 20952855 (-)
G106448 LOC106604502,LOC105008787 non-coding upstream 1307437 21795625 ~ 21799926 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding upstream 1386624 21874812 ~ 21875126 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 618369 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 1073256 19410368 ~ 19413015 (-)
G105890 NA other downstream 1381002 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 2295076 18180646 ~ 18191195 (-)
G105793 NA other downstream 2485826 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 2054461 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 2255242 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 2565125 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 2904916 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 3325669 23813857 ~ 23817543 (-)

Expression


Co-expression Network