G106340


Basic Information

Item Value
gene id G106340
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20951760 ~ 20952855 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133063
tgcctgcgtgtgtgtgcgtgcgtgtgtgcctgtgtgtgtgcgtgcctgcgtgcatgcgtgtgtgtgtgcgtgcgtgtgtgtgtgtgcgtgcgtgcttgcgtgtgtgtgcgtgcgtgcgtgcctgcatgtgtgcgtgcgtgcgtgtgcgtgtgaggGGAGGaggggagggggagagctGATGTTCTGTGTTGCTctcaatgtctgtctgtctctgtgtgtcactcTCTTGCTCGTTTCCCCAGCGCTGGCACTAGAACCAGTCGGCCACGTAGTCAAAGTCTTTGAAGAGCTCTTGCTCCTCTTCAGTCAGGGCCCTGCGCTTGTGGGGCAGAGTGAACACAGTGGCTGCGGAGCTGCATATGGCCTCACGCTCGCTGATTGTGGGGATGAAGGGAGGCGTCACTCTCTTAGCAAGCAGCGCTGGCCAATCCACACTCTGAAacaagagagaggaaaagaaggaTAAGGGGGTGCAGCCTACATGGGACAGAGACCTAAAACGGTTGTGTGCGCCACGTACCCTGAAGAAGGGGTGGGCCTTGACGTCTTCCACTCCGCGCTCCCCGGCGCCCAGCCGCAACTCTGGGTCTTTCTCCAACAGCTGCAGATGATTCAAAAcaagaaggagagaaggagaggcaCGTTATTCTCCAGCAATGGACTTAAAGCTGAAACGTGATGCTGGAGAGGAGTCCCGTCACATTTCAATAACAGTGGCATGCGTTCATTACGGTTGGGAAGCAGGATACCGAGGCACAAACTGGAGGAAAAAACTAGGCACACGAACCCCTGTGATGATGGAGGTGGCTTCTGTGGAGAGGTGGCTGGGGAATTGCACTGCGTCTCTGATGATGCTCTCGAACATGGCGTCCTCATCATTGCCAGTGAAGGGACGCTACGGGCAcaaagagaaagacaggagaGCGCTTGAAGGGTGACTCCAGACCGAGCCTTTGCATTATTCACAATCTGAGCCCAGGACTGCAAAAGCCACACGGACACCAATAGTGTAAACTGTGCAACCAAATGGTCAATTCACACCTGAGACATGACTTATTAAAGCA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133063 True 1064 lncRNA 0.55 2 20951760 20952855

Neighbor

gene id symbol gene type direction distance location
AMCG00011375 NA coding downstream 44649 20892590 ~ 20907111 (-)
AMCG00011372 NA coding downstream 223619 20713938 ~ 20728141 (-)
AMCG00011371 spock1,LOC106604788,LOC106611816 coding downstream 291153 20645503 ~ 20660607 (-)
AMCG00011370 trpc7,trpc7b,LOC107596405,LOC107654649,LOC108274464,LOC105903241,LOC103471336 coding downstream 407009 20499122 ~ 20544751 (-)
AMCG00011368 NA coding downstream 474679 20440474 ~ 20477081 (-)
AMCG00011376 NA coding upstream 6009 20958864 ~ 20966129 (-)
AMCG00011379 NA coding upstream 23828 20976683 ~ 20977159 (-)
AMCG00011378 NA coding upstream 28554 20981409 ~ 20989043 (-)
AMCG00011377 NA coding upstream 41597 20994452 ~ 21007340 (-)
AMCG00011384 NA coding upstream 59016 21011871 ~ 21021937 (-)
G106300 NA non-coding downstream 39622 20911919 ~ 20912138 (-)
G106278 NA non-coding downstream 336118 20615438 ~ 20615642 (-)
G106266 NA non-coding downstream 463572 20486271 ~ 20488188 (-)
G106224 NA non-coding downstream 675455 20272063 ~ 20276305 (-)
G106212 NA non-coding downstream 734284 20217251 ~ 20217476 (-)
G106448 LOC106604502,LOC105008787 non-coding upstream 842770 21795625 ~ 21799926 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding upstream 921957 21874812 ~ 21875126 (-)
G106454 NA non-coding upstream 973998 21926853 ~ 21928367 (-)
G106509 NA non-coding upstream 1697645 22650500 ~ 22653658 (-)
G106527 NA non-coding upstream 1743732 22696587 ~ 22696846 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 1083858 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 1538745 19410368 ~ 19413015 (-)
G105890 NA other downstream 1846491 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 2760565 18180646 ~ 18191195 (-)
G105793 NA other downstream 2951315 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 1589794 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 1790575 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 2100458 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 2440249 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 2861002 23813857 ~ 23817543 (-)

Expression


Co-expression Network