G106347


Basic Information

Item Value
gene id G106347
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21028793 ~ 21033188 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133072
TCtaaatgatacaaaatacaacacacaatATAATAGCAATGCATTCCAGTGCATCTCAGATAAAGAGGTtgtgggaaataaaatgcacaccTTGATTCCCCTGCCCATACCAATCTTCATTTTCTCTCATGCGGATCACTCAGACTTAAGGCCTTCAAGGACATTAAATTGAGCACCAgtgcaaaatattatttgaagggaaaactaacaagatttATTATAGGAACTGAGTTTAataaactggaagaaaaaaaaaagatatatagtAACATTTGAAGGAAATCCGGcttaaaaacatatatgtatatatatatatatatatatatatattactatatatttactCTATATGCAATAATATTGGTTTAATTTAGGGCCTTTAAAACTGAGCAATGCAGAAACGCCAGATAGGTGGCAAGTCAAATCAAACTGTGCACTGGTCAGGAGAGAGTTCACAGACCGAaactgaaatcaaacaaaaatcaagatAGCCCAACTGGAATTCTAGGACATATTAATGAACAAGATCCGTTGTTATTGTTCTAATTGGATTTCTGAAAGGATGGACCATCTGCATTTTCAAGtaccaaacaaacattttcataactttttaaaaccaaaaaagcatTCATTCACACTGATAAAATGAGTGGATTGGAAAATGAAAGTTatgaagagattttttttttttttttttaaacaataatccATTTAAAAAGTAGCCTTTTGGCTTCAAGTTCATGAGGTCAAAACCTTTAGTGATTAACGTTCCTATAGTTTaatatcaattaataataattgaaaataataaattacatcataatgaaaaataataataaatctagtaaaaataaaatgcagttaaacatttacatatacatttagttCCATAGAAAAATGTCCATTGTGGTGACCTAATTTATTGTTACAGAGCAGACTGTCCATCTTGATTTTACTATTCTCTTCTGATTAAGGTTCagtgtgtatgcatttgtttgggtTCAATGTCCTAATGCCAGAAGTCAGGCATCCCCTTATATTTGTGAAGTTCAGCGGTCAGAATAATTAATTCtctctcttaaaaataaaaaaagaggaaaagacaAGAGATAGTCTCTACACTCTGGATGGGATGCAACAAACGCGACCGTAAAGCTCaatgaatagaaaaaaacattgacccCATTTTTTATAAAGGCAAATGGAATGAAGCGTGTTTCACTGGAATAAAGGCAGAAATAAGTGACTGTGAGGGGCTGTGAAACAAGAATTCTATAccattttattcttgtttttcatgttttaataatagttttgtGACATCTGGGTCATGTTTTGTCTTCTGTCGCTCACCGATAATCTGTTACATCTATCCAGTGTGTGgagactttttatttaaaaactttatGTGCAATGCCTTTTCCAGTATTACATTCAAAGAGACATGGTTGTACGGTTTCTTGCCTttagttgaaaaaataaacctgatATATAAATGTCGTACAGCATGAACAACATAGGAAACTCAACAGTTTATGAAACTACCAATGTAGTTGGTGTGATGATAACAAAtgtggtttgtatactttgtgtTGAACAAAAGCTGAAGCAGTAAATCAGACAGATCACCTTTTGGagagcttgtttgttttttcatcaaatattgtaaaaatattgGTTGAAAACcctcttttattattaaaatgccaGTGCTTTTGGGTTTTATGtcatattatttgtttctatCTGGAGATTCTCTAGACCTGAAGTATACTGTTAAGCCTAATAATTGACCTACCCAAGATTATTCAATCGCAACATATAATCTATCAGATATCCTTGTCTGATTACTTATTCAGCGAACCAAACAAACTTTGgtgtaaaaacataatatttacgTAAATAATTCTCCTGCTGGGGGAAAATCATTTCTTGCCATGCCTGTGAACTTGAATGCTTAAATCAGACTGAAAGTAGTTTGTTATAGGTTGCTTAACTTGTACCCAAATCTCAAACTCCATGGCTCCTGCCACACACaacaagattaaaacaaaactgaagttTTTATCTCATTTAATCTCAGTTAGGAACAGCTTTCAACCACCAaggcattttatttcagtttattagcattttaataTCTGTGGGGACCATCTCGATCTACAGATATATATAAAGAAGGATAGCAGAGTGATGAGAGATGTTCAGGTGCTGATGTAAATCTTTGATGTCATAAAAAATTGCAATGACTGTGAAGAGTCAAATCATATCAtaaatgagatttaaaaaaagtttcattAATGCTTAATTTTGAGTGTCACACATCAGCGTTTAAATGATAATCCACAAATTAATCAATTGACTTTCTATACAgtccattttattttgccatAAAATGCAGACTGTCCATCTTAGCCTTCAGTGTTATTCACCAGATATGACGCGTCTCCTCACTTCTGACTTGCACATTGTAAAGAGTCATAATGGGATTATCGATTAAGCCCTTTTTATGACACTCAGAGTAAAGTACATTCTAGTACTTCTGCCTTTGATGCCATACATTTTCCAGTGGTCCCTCACATGCAATCAGTGTAGAAAGCACTGTCTGTTTTCAGATTGAAGCAACGGCTCATAGAAGCTCTAAACCTCTAAAGTCATCAAGGATATCAGTGGAAATTAGAGATGTTTCATAATCTGTCTGGAGCCATGTCATCGTGGGATGGTCTACACTAGTTCATGCAGCTCTGAGTTCATGTCATATTAAGGCAAATTCCTAACAGATAGAAGACAGCATTCACAATGTTTTCATAACCAATGAAACCCTCTGTGAGGCAACAGACGAGTAGCATAGTTAACAACGGTCTTCCAAAAGGGCTTTTTAACTCATCATATGTGAAAGGCTGCTGATTGGAGAACAAAACTCCTTAAAAGGGCTCAATTTGTCTACATGTTATCTGGCAGTGAGGGAGTTTAGGTTAAAAAtctttaaaggtttatttttttttgtgtttttttttgtagaaaatcttataaataaactataatttggcaaaacaaacaaacaaaaaatgcaacagCACTTTCTTCTTAAATGATTTGACATAATTTAACGATTAAAAGTCTATTTTCTAAAGCTGATGCAATCAATTCTTAGTCAGTGGGTAACCGTGGTTACACTGTATATCGTAATAGTCTGaagcagcattttatttatttattctttttaatggGCAAGACAATCCAGCAAGCCCATCAGTATAACCAGTGTAATTACAATTAATCTGAACATAAacctatatacatataattacagtTGATAAAATACAGTTTCTTCTTTCTTGTGTCTTCGTTCACAAGTCTGGCAGGTCCTCGTGGATTTCGCTGGCAGTCCCAACTTACCCTGCTGCGTCAGCTTTTGGCCAGCGGGGGGAGCACTCACATCACACTTGAGATACTACGGACTGAAGACTCGACTCGAGCACCTGCTAAGGCTCCCGAACTCCATGGATCGGTCAGAGAACGCTGGAGGTATTGCGGCTGGTGTCACTCggcttttttaatgaatatctgCAAGAAGAAAAAGGCACGGGGTGATAAAATCCAGTCACAAGACTGTTTTCGGAATTCCAAAAAGACAGAAGAGACGGATGGACGAGACACAGAGACGTACTTCGCTGAGGATGACCCAGACAGGCGAGTCTGTCAGCACCGACAGACGGATGGCCTCCAAGGGTCCAAAGGTGGTGTCCACTTCGCCCTCAGCGATGCCGTTCAGGAACGTGCCTGCGAGACACAGACTGCAATTAACCAGGGTGACCTACTGTTCTCCACATCATGACTGAGTGGCAGAATAAATAAGATGTGGTCCTTCCTCTCTTGGTGCTCAGTGGGTGAGAGCTGGGTTGCTTGGCCAGGTCAGAAGGTCTTTCTCAGACAAAATCACATACTAGTTGTTTATGTAGCGGAGGGCCTTGCTCTTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133072 True 3982 lncRNA 0.36 3 21028793 21033188

Neighbor

gene id symbol gene type direction distance location
AMCG00011374 NA coding upstream 70346 20954794 ~ 20958447 (+)
AMCG00011373 NA coding upstream 289769 20738382 ~ 20739024 (+)
AMCG00011364 NA coding upstream 1032823 19987249 ~ 19995970 (+)
AMCG00011363 NA coding upstream 1071159 19956472 ~ 19957634 (+)
AMCG00011361 NA coding upstream 1073706 19954620 ~ 19955087 (+)
AMCG00011380 NA coding downstream 93922 21127110 ~ 21131535 (+)
AMCG00011381 NA coding downstream 194022 21227210 ~ 21236755 (+)
AMCG00011387 NA coding downstream 286236 21319424 ~ 21385863 (+)
AMCG00011388 LOC105008787,LOC106604502 coding downstream 759340 21792528 ~ 21797963 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding downstream 835600 21868788 ~ 21876333 (+)
G106327 NA non-coding upstream 6674 21020210 ~ 21022119 (+)
G106310 NA non-coding upstream 76081 20952222 ~ 20952712 (+)
G106298 NA non-coding upstream 121140 20907450 ~ 20907653 (+)
G106277 NA non-coding upstream 413152 20615438 ~ 20615641 (+)
G106138 NA non-coding upstream 1014445 19978247 ~ 20014348 (+)
G106361 NA non-coding downstream 98510 21131698 ~ 21132430 (+)
G106362 NA non-coding downstream 101067 21134255 ~ 21134613 (+)
G106391 NA non-coding downstream 182433 21215621 ~ 21241493 (+)
G106443 NA non-coding downstream 893711 21926899 ~ 21928577 (+)
G106455 NA non-coding downstream 899416 21932604 ~ 22062654 (+)
G106242 NA other upstream 661570 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 689468 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 865827 20095229 ~ 20162966 (+)
G105916 NA other upstream 1806372 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 1911424 19107273 ~ 19117369 (+)
G106613 NA other downstream 2308120 23341308 ~ 23341765 (+)
G106618 NA other downstream 2322874 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 2715486 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 2802631 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 4574798 25607986 ~ 25662179 (+)

Expression


Co-expression Network