G106391


Basic Information

Item Value
gene id G106391
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21215621 ~ 21241493 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133122
CGTCTCTGAGGAATGGCCGCAGATCGGAAGTCAACgttccctggactaggataaccccgGACAAGGATaacccctggactaggataacccagcgccgtcagtgcaggatggtggatcctccgCAGGAGACGAGCTCGGGAAGAAAaaagtcaccgacacaatgccagatcgtttgtcttcagtttatttttgcaacaccacacagttttatacatgtcagaagtcAGAGTTCCGGGGCAGGACATATCATATCacagatctagttgctaggcAAACATGAAATGTGTCCAATATTATAACCCCTAACACACTCAAGAGTTTCGGTTGACATGCCTGCACGGTTTGCCTAGCAGTAGATGATGTAGGACTCTtatcttatttctggtttgtctgaagagcagcatgtatattgtttatgttgtcatcTCTGAGCTGttccttaaaatataatataaatatagggagattgtggtttgacatttcTAAGATAGAGTCGAGGGAAAAGCCGTGAGTTCAAGTGTCCagactttcacagaaatagttatgcgcgagtatgttatttatgttatttctgcaataatgacaAGTTTCCGCCCCCCTGCCACggcaacatttccagtgagatatgtcAATGTCAAATCTGCAGCGTCTGTTCTAATCTAATCCTTCAatcagaatacaatacaatgagttacatggttacagtaggttaaatgATCAGTATGCCTACCTAATATCAGAACAAAGCTTAATAATTCCTAAGAgtagaatatgttatataaaaatccttgtactctgttctcccaacatgcagagtattatacagtgggtatgtacaatacatagggggcaattttaccccaacaagTATCCTGGTAAAACCATATTCCGGAAGCAAAAGAGAATCACACATTAAGTATAATAAGAATTTTACAAGTcagcttttttaatatatgtaaataaattatatatgtctaaaattgcaaaaaaaaataaaagtccaACGGGGGTGAATACATCCTATAgcaattgtatatatatgtatatgtatgttaatGCCcccaaaatacatatacacatatatacatacacatatatgcaGATACAGTGCAAAACTACTGCTTTAACTCGATTAACTTGAGCTACAAATGTCTATGCacttttaacattaaaatatatttaataaatagataaatgatTGCTCTTTTCATGAATTGTCAATCAAGCTGGATAACTTGcttctaaattattttgtactatTCAAGATTTGCGTCATAGCTCCATTACAAATCTCTTCAAGAGCCTTGAGAGATTAAATGTGAGTTTGATCTTCATAGCAAAGAGGCGATCAATCAAATTAAGTTTAACATACAGAAGAATTTCTCAAACTCCCCGGAATGACTCAT

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133122 True 1406 lncRNA 0.37 2 21215621 21241493

Neighbor

gene id symbol gene type direction distance location
AMCG00011380 NA coding upstream 84086 21127110 ~ 21131535 (+)
AMCG00011374 NA coding upstream 257174 20954794 ~ 20958447 (+)
AMCG00011373 NA coding upstream 476597 20738382 ~ 20739024 (+)
AMCG00011364 NA coding upstream 1219651 19987249 ~ 19995970 (+)
AMCG00011363 NA coding upstream 1257987 19956472 ~ 19957634 (+)
AMCG00011387 NA coding downstream 77931 21319424 ~ 21385863 (+)
AMCG00011388 LOC105008787,LOC106604502 coding downstream 551035 21792528 ~ 21797963 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding downstream 627295 21868788 ~ 21876333 (+)
AMCG00011389 NA coding downstream 682466 21923959 ~ 21924258 (+)
AMCG00011392 NA coding downstream 1262479 22503972 ~ 22506745 (+)
G106362 NA non-coding upstream 81008 21134255 ~ 21134613 (+)
G106361 NA non-coding upstream 83191 21131698 ~ 21132430 (+)
G106347 NA non-coding upstream 182433 21028793 ~ 21033188 (+)
G106327 NA non-coding upstream 193502 21020210 ~ 21022119 (+)
G106310 NA non-coding upstream 262909 20952222 ~ 20952712 (+)
G106443 NA non-coding downstream 685406 21926899 ~ 21928577 (+)
G106455 NA non-coding downstream 691111 21932604 ~ 22062654 (+)
G106457 NA non-coding downstream 848564 22090057 ~ 22090265 (+)
G106464 NA non-coding downstream 1070221 22311714 ~ 22311963 (+)
G106478 NA non-coding downstream 1301786 22543279 ~ 22544072 (+)
G106242 NA other upstream 848398 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 876296 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 1052655 20095229 ~ 20162966 (+)
G105916 NA other upstream 1993200 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 2098252 19107273 ~ 19117369 (+)
G106613 NA other downstream 2099815 23341308 ~ 23341765 (+)
G106618 NA other downstream 2114569 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 2507181 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 2594326 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 4366493 25607986 ~ 25662179 (+)

Expression


Co-expression Network