G106443


Basic Information

Item Value
gene id G106443
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21926899 ~ 21928577 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133180
ATAAGCATAAAATATGGGTTGTATATCAGTATATGTTCCAACAGtctaaaaagagagaaaaaaaggttaCTACATTTGTGGTGTAGCCCAAGCTATTACCATATATTATGGATTATGTAAAATCGGTCTTGTGTGTTTAAAGATGGTTCTGGCTATTAGTTTAAGTCTAGAATGCCCTGTTCATTATAAAGACAATCAATTTGAATAAGCCAATTAAAAGTCCAGTCATGAGGATATAAAAAGCACATTCTTCTATTTTTTAAGCCATTTAATGGCTAtgataaaatacagcaaaaactGTAATCCATTGTAATTGCATTTAAGCCTAGTCCATTTCTGAGCTGCTCGATTGCCTTTTCTTAAATTCCAATTCTCTGTGGGTTGTAATGCTGGCATTGCCCATCTCAATCGCAGGAGGCCTACAACCGCTCACATCAACTGGCTGTCTACAGTGTCCTTGAAAGTAACTTAAATTCATTTGGGACAGTTTTGAGAATAAGTCGTCATCAGACACACGATTTAGAATGTACACAATTAGGTAATTAAGTGAAGCCTGgagcatttttttatattatataattagtaCATGTTGGAGACTTGAAGACATTTAGTGGGAAGATGTATTCAGGGAATACTGGTTATTTGGAGACTCTTACTcatcaaaataagtaattgtaaGGGCAAGCCAGACACGTTTCACAACCTGGTATATATTCTATCTTTAAACTGTGAATCGAATAGTTTTCAAAGCTCTTATCATGTTAAGAagtcaaattatttcaaattggtGCATTATTTCCTGCATTTGCACCAGGTTGTGTCTTTTATTCGAACAGTAAACACACATTGAACAAAGCCAGTATAATGCACTATATGAAGGGAAATTATAAGGTGTATTGTCTATTTATATTATCTagaatcatttttatttaatctgtctgAAGAGAATTCCTAGATGTTGACcatgcattgaaaaaaaatgaaagctgcTGCAGTATTGAGATGAAGATGGAACTTGCTTTGACAATGAAGGATGTGTAGTTGAATTGGcccaaatgtttaattgttgatGATCTGCTTTAATTCTCATTTTGTTgtataaagttaaaaatatttatgttttgcatttctcttgtggatatatttatatatctgtaCACCATTTGAAAACCTTAGGATTAAAAATGGCCTTTTACTCTTCTAGATGTTCACAATTatgctgtttaatttaatttcacttgcTCAATTGTTGCTTTAGCAAAGCGAACAAATCATTTTTCATCACTCCACTTCAGAGCTCCCCTTCAATACCTCTTGACTCCCCTCTTACCTTATCTGAACTGCAGGGCTCAGGAAATAGGTTTGATACTGTGTCTTTAAAGTTGACATCACTGATAAACAGCCTGAGAAGTGAAGGGATGTGCTTAAAATGGCAATTTGAAAAGGACAATAAAGGAACTGAGAGCTTTATTTTGAGTTTTGCCTCCCTTTTACCATCTCCTTCTATTTACCTTATAATCAACTTGACCTAAAGCTAAACCTGTAGCCTCCAAGCTTGAACATCTTGTCTTCAAATCCTTGCTCTGTGAATGACTCTGGAGTAAGATGCTCTACCTCTAAGTGTTTCAGTATAATATATCAGCAAGACAGAATTCCAGATAATGCAAGATGCAGGCTTA

Function

NR:

description
PREDICTED: protocadherin alpha-C2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133180 True 1679 lncRNA 0.34 1 21926899 21928577

Neighbor

gene id symbol gene type direction distance location
AMCG00011389 NA coding upstream 2641 21923959 ~ 21924258 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding upstream 50566 21868788 ~ 21876333 (+)
AMCG00011388 LOC105008787,LOC106604502 coding upstream 128936 21792528 ~ 21797963 (+)
AMCG00011387 NA coding upstream 541036 21319424 ~ 21385863 (+)
AMCG00011381 NA coding upstream 690144 21227210 ~ 21236755 (+)
AMCG00011392 NA coding downstream 575395 22503972 ~ 22506745 (+)
AMCG00011394 NA coding downstream 671341 22599918 ~ 22603575 (+)
AMCG00011395 NA coding downstream 675439 22604016 ~ 22630597 (+)
AMCG00011397 LOC108416539,LOC105007475 coding downstream 717455 22646032 ~ 22650834 (+)
AMCG00011396 NA coding downstream 741164 22669741 ~ 22691805 (+)
G106391 NA non-coding upstream 685406 21215621 ~ 21241493 (+)
G106362 NA non-coding upstream 792286 21134255 ~ 21134613 (+)
G106361 NA non-coding upstream 794469 21131698 ~ 21132430 (+)
G106347 NA non-coding upstream 893711 21028793 ~ 21033188 (+)
G106327 NA non-coding upstream 904780 21020210 ~ 21022119 (+)
G106455 NA non-coding downstream 4027 21932604 ~ 22062654 (+)
G106457 NA non-coding downstream 161480 22090057 ~ 22090265 (+)
G106464 NA non-coding downstream 383137 22311714 ~ 22311963 (+)
G106478 NA non-coding downstream 614702 22543279 ~ 22544072 (+)
G106477 smad1,smad5,LOC107598346 non-coding downstream 615607 22544184 ~ 22544435 (+)
G106242 NA other upstream 1559676 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 1587574 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 1763933 20095229 ~ 20162966 (+)
G105916 NA other upstream 2704478 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 2809530 19107273 ~ 19117369 (+)
G106613 NA other downstream 1412731 23341308 ~ 23341765 (+)
G106618 NA other downstream 1427485 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 1820097 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 1907242 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 3679409 25607986 ~ 25662179 (+)

Expression


Co-expression Network