G106448 (LOC106604502,LOC105008787)


Basic Information

Item Value
gene id G106448
gene name LOC106604502,LOC105008787
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21795625 ~ 21799926 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133185
tacaaaattttAAGAatctttattgaaataaaatttcCTTTAATTATCAAAAGTATACAAATTTACAGGTTACattcttctgaaaataaatatcaaatcaaatggAATTAAAAAGGGGATAACTGcagctttaaatacaaaattaactcGCCCATTTTGTAACAGACATCTTGACACAGGGGTCGCATTTATCAAGTTTAACAGTTGAAAGCTACCTCCCTCAGCAAAGACCTTTTACTATAGATAAACTAAACTGCTGTATAAAAACTCGAATTGCCTTCACATGCAAAATATCCTGGCAGCATGCACAGTAAAGTCGTAAAGCTTTTATCATACTGTATCCAAGCTTCAATGCATCCCTTGCTTCTCCAATTGTGTCTTTCCTTTACGTACTTTAATTATTGGCAATTTATTgtgaattaaacaattttataaGAGATGCACACTTCTTAATTGTGTATAGTTGATTATTAAAAGAGCAAGAATCTTCATAAGTAAATTCTATGATTTTGTGTGGGCAGAATTGTTCTACACAGAAACATAAGGGCACCTgcttattgttattttacagacactttaccttttaagtttttaatataCATCAGATAAAACCCAAAGCTGGCATATATCTATATGCACAAATCAGATTGATTTCATCTGTTGTGCGTCACAgatctaacaaaacaaaacaaatgtggggAAACACGAGTCATGAAAATTAATAGCAAAAGTAATTTCTAGGGATCAGCCTTCACTTGgtacacaattaaacaaacatcatCATGAAAGTCTCATGCTAACTTATTAAATCTGCAaaagaattttaattttaatatacgAGAATTTTAAATGAAGTGAAATTATGAAACGTatgaagaaaacagaaaacattaaaaacaaattttgtattaacaatCTATTAATTACAGGTTGAAATAGTGTATTCATCTTACTGAAGACTTCTAAATGTATATAGGTAAGGTAAACAATAACTTGTGGCACCTTAATACCATGTGGAGGGTGTAATTAAAATGCGACCCCTGGTTTAATCAAACGCAAACTAGTAAAACAGAACATTCAGTATcaacatatatacaattttaaagtcAGCCTGCCTTCAACTGTGTCCTAGAAAAGTAATTCAGCAAATCTTTTTGGTTTTTATCAAGGCTACAGTAAACTTCATCTGCTCCAGACTTGTCCATTTTCTTGATGTGAGTAAAGGTTAATACTAAACCAGACCTCACAACCTTTCTTTTTATAGGTGGTATACTAAGGTCTTGACATTGAAACCTCATAATATGCAGGTATTTAACATCCCCAGGTATGTAAAAAAAGGCACTTCGGCAATTAAGTTGGGGATGGAATTACCTGTTATTAGTCTTTGTTACTGAAACTAATTTTTAATTGGCTTGTCAGAAGGCTGAGAGGTAGGGTTTAAAACCTTTTTAGTGCATTACAGTGCAAAAGACATTCCTCCATATTTAagtgtgtgggttttttttctccagtgtcCACAGGAGAGATTTCAAATCTTTCGAAAAAGAAAAGTTTCATGTTTAGTTAACATAAgattttaatgtgaaattgcCTTAAAATTCTTCCAAGTGTGCCTTACAAAGAAATAAGTCAAGCCATTGTTCGGTCTCAGATAAGAGTGAGCTATGAGACCAAATATCACTGACCCTCAACATTTGACACATGAATATGGAGGATGCATATCACCATTTTGTCCTTCATAGCTGAAGCAATGCCGGTGCAGAAAACCCAGAGCAACTAAAAACACCTCCTTcatttaaaaggttaaaaaaaaaaaacacacaaacaaaatcctcaaatatttgttttggcttcaataagaaaaataaaaataaaagacaaacagacaaaaaagtgTACTAAAATGACTAACTCTTTAGTATAGGCAAAACATTTCTGGGATTTCTGGGGTAGAAGTCCATTCCTACCACACCTCATTAGTCCACATAATGTTCCTGTCCAACCCTGCTGTGTTTAGGAAGTCATCTCCTACCTGTTTGTTGCTGTATTTCGGGGGGTTGGCCTTGTAGCTGTAATCCGAATACTGGTCCGAACCCATGGAATTGTTGTCTCCAGTCCCGACAAAAGTGTTGGTTGCTGGGAGGTCTTGGACAGCTTGATGCTTCTTAGATGCAGAAGGAGACTGGGGCTGGAGCTGGATGGAGGGCAGGGGGGAATTGGAACGGTAGTGGCGGCCAAGGTCTGGGCTACCAGGCGGGTAATTAAGGGGTAAGTGGATTCTGGGACTGTCATTGACGCCATCATTGATGAGGTTGAATTTTAAACCCTTCGGGTGGCTGGCTTCCTCATCCTCCTCTAAAGTCTTGGCAGGCTTGGgggcttttccttttttcccctttttcccTTTGTTACTCTTCGGGCCCTGTTTGGGTGCATATAGATCCTTGGTCTCCTTCTTCCCTGCCTGGTAACCACTCTTAGCCTCTTTCTGCAAGTGGTAACGAATGACCACAACAATAACGATGACCAGGATGACCCCAGTGATCCCCGCAAGACTGCCATAGAGGATGTTGCTTCGCTGGGTGGACTGGCTAGAATCAGGATCCCCAGCAATATCTCGGTCTAAGGGAGTGTAGAGACTGTGCCCCACCAGCGACTCCACTAATGTGATGTTGTTGATGGTCTCGTTCACAAAAATGTGCACCAAGGCTGTGGTATGTCTAGGGGGCTTCCCTTTGTCGCTCACTCTTACAACTAACCTATGAAGTCCATTGTGTTTCCGAAGAAACTCTTTAGCTAAAGTGATCTCTCCATCAGAAGGAGAAATGCGGAAAAGGTCATGTGGATTGCCACCTGTGATACTGAACACCAGCTCCGCATTTGGGCCAGTGTCCATATCCTCAGCCTCCACTCTCTCAACCATTGAATCAGGGTTGGTTAGAGGGGAAAGATGCTTGTAAGAGGAATTTGAAGGTGTACGTGCTTTCCTTCTCCCGGTCAAAAGAGATGCTGGAGTAAATTGTCCCCGTGCCGTTCTGAATGACAAATTTACCATTATCTGGCTCAACAGAAATATGCACTCGCGCATTCTCGCCTTTGTCAGCGTCCAGGACTGTCACCATTCCGACCGGACTGAGAGGGGGCATGTTTTCTGACACAGAAAAGCTGTAGCCGTTCAGCATGaatttggggtcattgtcattgCGGTCCAGCACCTTGATTACTACTGTAGCCGTTCCTCGAAGGCTGGGGACCCCTTTGTCGGCAGCTGCCACGTTGAATTCATAGCGTTCCCTATGTTCGCGGTCCAGCTGGTTGCGCACCCTCACTTCCCCCGTGTTTGAGTTTATTTCAAAGAGACCTTTCGTGGAGGAGTCAAGGATAATGCTGTATGTGAGCTCAGCATTAGTGCCGCTATCTGCATCTGTAGCCACTACATCCACGACCTTGTCCCCTGGCTGATTTTCTTCTGCAAAATCCACTTCGAAGTGGCTCGGAGAAAAGATGGGCGAGTTATCATTTATATCTGTAACCTGGACCTTCAAAGAGTTGGTACTAGAGAGAGCTGGATTGCCCGAATCCACAGCCACGATCTCAATCCGATACTCCTTGACCCGTTCATAATCCAATAGAGTTGTGGTCTGGAGGAagtatttcttcttcttgtcaCTTGAAGATTCACTCGCTGGCCTAAGCTGAAAAGGGACGTCCCCAGCGACCACACAAGTCACCACGGCATTCTCCCCTTCATCACGGTCTGAGACTTGGACCAGGGCTACTGGGGTTCCAATGGGCATGTCCTCCGAAATATTGGCCACCCCATCTTGATGGATTACTAGCCCAATTCCACGGATCTCAATGGTGGGAGCATTATCGTTCTGGTCTTTCACGTTGATGGAAACGAAGACCTTTGAACTCTTGGGTGTGGGTCCTTTGTCTCGGGCAATCACATAAAATTTTAGCACATTTACTTCTTCTCGGTCTACAAGTCCCTTCACATAGATCACCCCACTAGAACGATCAATCCGCAGCAACCTCTGAACAACATCAGAGGGTTGATGTAAAGTGTACTCAATCTCTCCATTGGGCCCCATGTCTGAGTCATTGGCTTtcacctgcaaaaaaaaaaaaaggtagatTTATATccaaattcaaattacattataatgtaaGATTCATTTATCTAGATCAGGCA

Function

NR:

description
PREDICTED: protocadherin-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133185 True 4195 lncRNA 0.41 2 21795625 21799926

Neighbor

gene id symbol gene type direction distance location
AMCG00011386 NA coding downstream 580995 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 641823 21135426 ~ 21153802 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding downstream 720849 21064143 ~ 21074776 (-)
AMCG00011385 mgat4b,LOC106604568 coding downstream 747376 21032802 ~ 21048249 (-)
AMCG00011384 NA coding downstream 773688 21011871 ~ 21021937 (-)
AMCG00011393 NA coding upstream 764173 22564099 ~ 22600783 (-)
AMCG00011400 NA coding upstream 894215 22694141 ~ 22694827 (-)
AMCG00011398 NA coding upstream 938752 22738678 ~ 22743075 (-)
AMCG00011401 NA coding upstream 980761 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 1139814 22939740 ~ 22949010 (-)
G106340 NA non-coding downstream 842770 20951760 ~ 20952855 (-)
G106300 NA non-coding downstream 883487 20911919 ~ 20912138 (-)
G106278 NA non-coding downstream 1179983 20615438 ~ 20615642 (-)
G106266 NA non-coding downstream 1307437 20486271 ~ 20488188 (-)
G106224 NA non-coding downstream 1519320 20272063 ~ 20276305 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding upstream 74886 21874812 ~ 21875126 (-)
G106454 NA non-coding upstream 126927 21926853 ~ 21928367 (-)
G106509 NA non-coding upstream 850574 22650500 ~ 22653658 (-)
G106527 NA non-coding upstream 896661 22696587 ~ 22696846 (-)
G106547 NA non-coding upstream 959608 22759534 ~ 22761316 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 1927723 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 2382610 19410368 ~ 19413015 (-)
G105890 NA other downstream 2690356 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 3604430 18180646 ~ 18191195 (-)
G105793 NA other downstream 3795180 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 742723 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 943504 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 1253387 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 1593178 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 2013931 23813857 ~ 23817543 (-)

Expression


Co-expression Network