G106453 (LOC103471465,LOC102309231,LOC102203450,LOC107738605)


Basic Information

Item Value
gene id G106453
gene name LOC103471465,LOC102309231,LOC102203450,LOC107738605
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21874812 ~ 21875126 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133190
AACCTGTGACAGAAATCACCGTTTATgtcagttttgtcagtttgaTATGTGTTGTCAAGTACTTATACTGTAAGGTGGCACATTGGTCTTACCATTTTCTGGGTGCTCCATTTCACCGATGCTGCCATCAGGGGTGGTCCTCTCGTAGTGGTCCTCAGGGAGAGCCAGGGGTCCAATCCTGGGACCTGAAGAGGACTTGCTGCTCGGGGTCTCAGATTCTTCCAACCCGCTGTCATAGTAACTGTGCTGGGAGGGGTCCTGCAGGTCTTGCGCTTGATTGGCTGTAGAGAAGGTCACTCGTCGATGTGGCAACTG

Function

NR:

description
PREDICTED: protocadherin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133190 True 315 lncRNA 0.51 1 21874812 21875126

Neighbor

gene id symbol gene type direction distance location
AMCG00011386 NA coding downstream 660182 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 721010 21135426 ~ 21153802 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding downstream 800036 21064143 ~ 21074776 (-)
AMCG00011385 mgat4b,LOC106604568 coding downstream 826563 21032802 ~ 21048249 (-)
AMCG00011384 NA coding downstream 852875 21011871 ~ 21021937 (-)
AMCG00011393 NA coding upstream 688973 22564099 ~ 22600783 (-)
AMCG00011400 NA coding upstream 819015 22694141 ~ 22694827 (-)
AMCG00011398 NA coding upstream 863552 22738678 ~ 22743075 (-)
AMCG00011401 NA coding upstream 905561 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 1064614 22939740 ~ 22949010 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 74886 21795625 ~ 21799926 (-)
G106340 NA non-coding downstream 921957 20951760 ~ 20952855 (-)
G106300 NA non-coding downstream 962674 20911919 ~ 20912138 (-)
G106278 NA non-coding downstream 1259170 20615438 ~ 20615642 (-)
G106266 NA non-coding downstream 1386624 20486271 ~ 20488188 (-)
G106454 NA non-coding upstream 51727 21926853 ~ 21928367 (-)
G106509 NA non-coding upstream 775374 22650500 ~ 22653658 (-)
G106527 NA non-coding upstream 821461 22696587 ~ 22696846 (-)
G106547 NA non-coding upstream 884408 22759534 ~ 22761316 (-)
G106587 NA non-coding upstream 987482 22862608 ~ 22862952 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2006910 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 2461797 19410368 ~ 19413015 (-)
G105890 NA other downstream 2769543 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 3683617 18180646 ~ 18191195 (-)
G105793 NA other downstream 3874367 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 667523 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 868304 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 1178187 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 1517978 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1938731 23813857 ~ 23817543 (-)

Expression


Co-expression Network