G106485


Basic Information

Item Value
gene id G106485
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22564099 ~ 22567261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133223
TGAATGAAAACACATGTGTTTATTAAACAGTACAGATACGTGGAACCCAGTTCTCCTCAAAATGGCAAGAGATCTAACCTGAAGAATTTACACATTACAGTAGTTTAATTCGACAGCCTTTTAAAATCAGGGAACATGTGGAAAAGATAGATTCACTACTGatgttgaattatatatatatatgaagagcTAAAGTGTCTGCAGCTGTGCTCAAGATATGTAATTTTCAATAGGAATTCCAGTTTATAAAAGTCAGATTGAGCCACAAACTATGAGGATTTAGAAGTAGCATTAGGTTTCTCACCACTTTGACGACAGACAGACTgcagacttaaaaaaaacaggactaGACAGTCCTAGGCTGCAACCACAGGTCTTTTGAAGTATTAAGTGAAAGACGAATGCCTTTATTTAAAAGGCTGAGTGAGCCTTTTAGCCTTGTCAGCTGATTGAGGTCTACCTTTGACAGCCACTTTTACCAATGACCACCATTATAAGGACACAAGACTAAGCTCACCTTCAATGTCTGTGTCCTTTAATGTCCTAATTACTGCTTAACACTTAAAAgtaacacaatgacacaatGTTACACAAATCAGTTTCCTAGCTGAACTGACAATCAGGATTTTCCACTGTTGCACAACCATGCACAGATCTTTGAGTTGTACTATAACTGCAAGTgaagacaaacaaaccaaacaaaagataaataaaataaaattagacaCGTTAAACCTTGTAAACCTTATAggtacaaatgtatataaaccaAAACACTTTGGctacaaaagtatttattttttattttttgatgcccagattttttttttaaccttttttattcattttttgtccAGACAAACGTTATTAGTACAGTATCTTacaaaacgtgtgtgtgtggttgagtgtatatttgtgttttacagtttgtttcaaaaacacaaacctgcAAAAATGAACTAGACAGTTTACTTAAATCTAACAATCAAATAGAATTACGCTAAATTGATTTTAGTTCCAGCTTATACCATGCAAACATGCTAGTtataggaaaataatatatgtaaagattaaaaaaaaaaatctgtttggtTTTATCTTTAAGTCTTAAAAAGAAAGGTAGTTTTGTATTATCATGTATCTGATTATTTGAAACCAGTTTGCATgacaatttcagaaaatatgaaCAAACTTACCCCTAACCATTTCTCCCAGCTTAGCATCAACGCCCCATCAAATGAACTTAAGTCAACTCTCTGTTTTATCTAATGTTAGCCttctgcttaaaaaaattacaaatatttacttttcaaactatgtatatttttgtctttacatttgtggaaaaaaaagacatttaaagacTTACACCCGCTGAACATTCAAGTGTGAGAATACATCCCACAGAAAAAGGAATAGCTTTTAATGAAATTAGTAGCtctaaagattttgttttttttcctcttcacagAAGTTGCTGGAAGTTAACGGCTAACTCGTCGGCTGGAGTGACTTGACAAAACCTTCTGAAATAGGTCATCTGAAAGATAAGGCTTGGGAGCTGAAACAAACAGTAGGTTTTAAGCAGCTGCAGGCCATTGAAAAAGCAGTCCATTAGAAGGCGTCTCATTATGTAATGAAGATGTGACAAATGCCCCACTGGACTGGAATAACAATTGTATCCCAGGTAAGGCGTTTGAATGTGGACGTGTTAAAGTTGGGATTTCTTACGCAGTGGTTGTACAACGGAGCCAACGGCATGGACTACTCCATTGGTGGCCATCATATCCGCTTCAATCACTGGCACCTTGTTGATATAGACAGTgctattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133223 True 1834 lncRNA 0.35 3 22564099 22567261

Neighbor

gene id symbol gene type direction distance location
AMCG00011392 NA coding upstream 57354 22503972 ~ 22506745 (+)
AMCG00011389 NA coding upstream 639841 21923959 ~ 21924258 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding upstream 687766 21868788 ~ 21876333 (+)
AMCG00011388 LOC105008787,LOC106604502 coding upstream 766136 21792528 ~ 21797963 (+)
AMCG00011387 NA coding upstream 1178236 21319424 ~ 21385863 (+)
AMCG00011394 NA coding downstream 32657 22599918 ~ 22603575 (+)
AMCG00011395 NA coding downstream 36755 22604016 ~ 22630597 (+)
AMCG00011397 LOC108416539,LOC105007475 coding downstream 78771 22646032 ~ 22650834 (+)
AMCG00011396 NA coding downstream 102480 22669741 ~ 22691805 (+)
AMCG00011404 NA coding downstream 177260 22744521 ~ 22749846 (+)
G106481 NA non-coding upstream 9609 22554259 ~ 22554490 (+)
G106479 NA non-coding upstream 16692 22547164 ~ 22547407 (+)
G106477 smad1,smad5,LOC107598346 non-coding upstream 19664 22544184 ~ 22544435 (+)
G106478 NA non-coding upstream 20027 22543279 ~ 22544072 (+)
G106464 NA non-coding upstream 252136 22311714 ~ 22311963 (+)
G106513 NA non-coding downstream 125476 22692737 ~ 22694844 (+)
G106586 NA non-coding downstream 295347 22862608 ~ 22862952 (+)
G106588 NA non-coding downstream 361868 22929129 ~ 22935544 (+)
G106607 NA non-coding downstream 639985 23207246 ~ 23207477 (+)
G106609 NA non-coding downstream 786367 23353628 ~ 23355643 (+)
G106242 NA other upstream 2196876 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 2224774 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 2401133 20095229 ~ 20162966 (+)
G105916 NA other upstream 3341678 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 3446730 19107273 ~ 19117369 (+)
G106613 NA other downstream 774047 23341308 ~ 23341765 (+)
G106618 NA other downstream 788801 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 1181413 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 1268558 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 3040725 25607986 ~ 25662179 (+)

Expression


Co-expression Network