G106509


Basic Information

Item Value
gene id G106509
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22650500 ~ 22653658 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133248
CCAgcaatgtctttatttaaaaagagaaacctaacacaaaacaaaccctcTCATCAGTTGGACACAAGGCACAGCAGAAAAGTTAGGTGTCAAACCTACAGTAAGTTTAGAGAAACCAACTGTTAAGAAAATGTGCAACTGAACAGTGAGAACCAGCACCTTAAAGGATCCAACTGACAGTCATGTAAGATTAACAGTTCTTTTTGGTTTAAACGCCACATCAACATTAATGACCTCCATTTCTAGTAGTTGAAGTACAATTGACCGGTCTCAAATTGTAGTCTGATTGGACAGCATCCACTTGACTTCACACTTGGTAGGCCCGTATGTCCCTAAATATACACCTAAACACACAAATCAAGTagaattttaaacattatttacatCAGGAACTAATTCAGTCTGACTGTAATTGAGCACTCCTAGACTCTTAGATATCAATATATACAGTCACTCTCTTTGGATTGTACAAGGATCCAATTCATTTAGTgaaattcttattttgtatttatttagtttcttccCAAGTTATCGTGGTGAATAAAATGGCGATTTTCTTTAAAGCAAAACACGAGGgttgtaaatatgttttatttggatAAAGAAACTTGGGCGAGACTTAAGAACGGAGgatgctatttaattacattatcaagagcatatatacacacacgacTAAGAGATGTAGAACATACATGCTTTATAATCTAATCTTAAAAGGTGGTTCTGCGAAATAGAAAGTCAATATTTGTACTACTGGGTTGTATCCTGCCAGCAGGACATGGATATTGTGTTGACATTTGATTTCTTACACTTCGCTCAATCTGTTAGTGCTATTCaggtctctctctttctttgttttttgcagaCATTGACTAGCTTGAATTATTTAGGGTGATATTTTAACATGCCTATCTTTGCCATCcccaaaaatatgtattgtctCATACTTGGATTTTAGttgcctttattattttttaaatgccctCTTGACTTGTGTGAGACGTATTAAGCCAACTCTTAATTGTTACTTGACTTGCAATTACAAAAGTGTCCAgctaatttaaagtatttttaatacaaatttaaatatttccatgaGAACAGTATTCTGGGAGGTTTTTTATATGAAGATACTTCCCCCCCATTGTTACTGATTGATATTCATGCATCTTAAAAACAATCTACCGAAACACTCTGAAGGCCAGATGAGAAAACACTgcctttatttaaaactgacatgcacaaaatagatttattttaaatctaggTTTTCTAAAtagtatttctctttttttaatacataacaaatgtatataattgatAGTGCTCTAAAATCTATATACagacaaacatgtttttctcttgaGAAATGATATTTAAACTTTGTATCTATTGCCTAGGTCTCATAAGCTATATTTCTTAGTGTCGCCCCATGACTGTGTGGCATCAGTAGTGTTGCAATTTATGTATGATAATGTATCAATACATATCAGTTCACAAAACtccaaaatacataaatacattcaaaataatactaaaCAGGGAGCTGGCATTGCCGTTTCTGAACTCTgaatacataatgtgtgtgtgagtttcaaACAAACATGGGGGATCATCATGTTATTATTcactctgtactgtgtgtatatgtgccTCAGGTTGTGTGATAGCATGTTATACAGAGAGCAGCATGTAGAAAATCTTGCTTGTGTTACTTTTACActtcacaaatatataaaatagtttattagCTCAGCAATTAGTGCTCAAAAACACACCTCTGTTCTCCAGCTGTTGTGCTACTCTCCTTCTTTAAagtctttaaattatatttctatttgcATGAACCTTCTGTTTAGTGCAAAAGTGCCACCATTAAAACTTCTGTTGTTTTAGCTACATTCTTTTCTCTCAGCAATTAATATATCACACCCATCTGACACTATACAAATACTATgagaaacctgttttttttttcccttttctacaaatttctatCATGAAAGAAGTCATTACGTTCACTAGTTGTCAAACCAAGTCCCTTCCCATGCTGGAGTAACTGAATACTTTTGTGAGCACGGTGCGTATGTGTCTATTCTGGGAAAATCACACTGTACATTCTGCTGCTTATAGCTCCTAAATCATAACACATATGTCAACAAAATGAAGTGTACATACACACAGGGACACCAAACACATTTGCAGAATTTGCATGTTTTGCCACCAGAGGTTGCCACTTCATTCAacgatataaaaaaaaaaaaaaaaaaacacaggtggTATGCTATCTCGGCGAGTTATAAGCAATCAGTCACTTACCCTGCCTATAAACAGACACTAACACTTGATATAATGTGATGTAATTCCATAGTACAGAGGGAAATGACTACAATATgtatgtcacacacacacacgcacacacatatgtacaccCACAGTCACCATGTGCTGTTCTCCCGCTGTGTTATCGCCAGGGTGGTCTGGGCGCAGTGAGGGCGTCATTAGGACTCCTTGGAGAAGCTCTAGTCTTCGTCGCTGATGTGGCCCTTCTCCTCGCTCAGGCCGCTCTCGTCGATGTTCTCCAGGGAGTCAGCGCGCTGCAGGCACAGGTCGGCCAGGCTGATGCAGGGGAGCGTGTTCTGCTCGGGGAACATCCACGGCTTCAGATTGGGGTTGTGTTTCCGCTTCCACTCGGGGTATTTCTGGCTCGCCTTGTAAATCTTCTTCATGGCCTGCCAATGAGAAAGCACCCATGATGCTGCTTCCCAGGTTAATAGTGCGTGGTAGTCTCACTAATTTGTCAATAATACTTTTcctttgtacatatatatttaccagTTCTGTTTTGCTACAAAATATATTGAGTCGAAAAGGGAATCGAGAAACCAGTCCAAAGTGTAAAAGTAATGTCCTAAATAAATCAAGAGGTGACACATGCAGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133248 True 2947 lncRNA 0.37 2 22650500 22653658

Neighbor

gene id symbol gene type direction distance location
AMCG00011393 NA coding downstream 49717 22564099 ~ 22600783 (-)
AMCG00011386 NA coding downstream 1435870 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1496698 21135426 ~ 21153802 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding downstream 1575724 21064143 ~ 21074776 (-)
AMCG00011385 mgat4b,LOC106604568 coding downstream 1602251 21032802 ~ 21048249 (-)
AMCG00011400 NA coding upstream 40483 22694141 ~ 22694827 (-)
AMCG00011398 NA coding upstream 85020 22738678 ~ 22743075 (-)
AMCG00011401 NA coding upstream 127029 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 286082 22939740 ~ 22949010 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 687342 23341000 ~ 23345841 (-)
G106454 NA non-coding downstream 722133 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 775374 21874812 ~ 21875126 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 850574 21795625 ~ 21799926 (-)
G106340 NA non-coding downstream 1697645 20951760 ~ 20952855 (-)
G106300 NA non-coding downstream 1738362 20911919 ~ 20912138 (-)
G106527 NA non-coding upstream 42929 22696587 ~ 22696846 (-)
G106547 NA non-coding upstream 105876 22759534 ~ 22761316 (-)
G106587 NA non-coding upstream 208950 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 440633 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 522822 23176480 ~ 23176756 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 96363 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2782598 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3237485 19410368 ~ 19413015 (-)
G105890 NA other downstream 3545231 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 4459305 18180646 ~ 18191195 (-)
AMCG00011399 NA other upstream 89772 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 399655 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 739446 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1160199 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1175639 23829297 ~ 23835074 (-)

Expression


Co-expression Network