G106527


Basic Information

Item Value
gene id G106527
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22696587 ~ 22696846 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133268
GACTGACACCAAACATTTAGTTTCAGTTGAGAGCTGGCCTGTGACAAGCTCTGTGAACATGGTGTCTTTACAATTTGTAGTGAAAATATTTCTGAGTTTTTTTGCTCTCAGCTGGACTGGTCTGGTTATCAAAGGGGAATCATGTAAAggtaagagagaaaaaaatagagGAGAGAGGCTGGTGTTCATCTTAAATCCCTTAAAAAGACACTTATATTTTGtcctttatatatttcatttgtgaaaCCACCTCAGCTTAT

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133268 True 260 lncRNA 0.37 1 22696587 22696846

Neighbor

gene id symbol gene type direction distance location
AMCG00011400 NA coding downstream 1760 22694141 ~ 22694827 (-)
AMCG00011393 NA coding downstream 95804 22564099 ~ 22600783 (-)
AMCG00011386 NA coding downstream 1481957 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1542785 21135426 ~ 21153802 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding downstream 1621811 21064143 ~ 21074776 (-)
AMCG00011398 NA coding upstream 41832 22738678 ~ 22743075 (-)
AMCG00011401 NA coding upstream 83841 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 242894 22939740 ~ 22949010 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 644154 23341000 ~ 23345841 (-)
AMCG00011413 sparc,LOC105030028 coding upstream 654063 23350909 ~ 23361150 (-)
G106509 NA non-coding downstream 42929 22650500 ~ 22653658 (-)
G106454 NA non-coding downstream 768220 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 821461 21874812 ~ 21875126 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 896661 21795625 ~ 21799926 (-)
G106340 NA non-coding downstream 1743732 20951760 ~ 20952855 (-)
G106547 NA non-coding upstream 62688 22759534 ~ 22761316 (-)
G106587 NA non-coding upstream 165762 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 397445 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 479634 23176480 ~ 23176756 (-)
G106604 NA non-coding upstream 480011 23176857 ~ 23177129 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 142450 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2828685 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3283572 19410368 ~ 19413015 (-)
G105890 NA other downstream 3591318 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 4505392 18180646 ~ 18191195 (-)
AMCG00011399 NA other upstream 46584 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 356467 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 696258 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1117011 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1132451 23829297 ~ 23835074 (-)

Expression


Co-expression Network