G106547


Basic Information

Item Value
gene id G106547
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22759534 ~ 22761316 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133292
CTGATCCTTTTTAATCATGGCTCAAAGGATGTGATAATTggctattgatttaattaatgtttaaagtaTTCAATATGAATAAAATTGTTACACAATATCAAATCACAAatctgaagtatttatttatgaaattgaTTACAGGagaaaattaaacttaaaacgaaaacaaaaaaacatccaccaccaaataaaaaattggaaataataaaaacggtcctaaaaaaacaaaacaaaaaacacttataTAGGTTTTCTACTGGGACGATCTCAAGAGCTCTTCtggattttccattttaataatcatcTATTGACTGTGTAGCCTCCCCAAATAGTTACACACACAAGAGGATTATGCCAAAGGTCACAGTAATACAAAGATACAGCACATGCAAAAGTAGTACGGCCTTCAGAAAACAAGGTTTAAAACTGTAGCTTTACTCAAGAATGAAACTGAATACTTTGCTTTCTAGTGTGATGAATTCTTGcatggatttttaaaatatgattttacagGCAGAATTCAGGATCAggttaaaatgacattttaattttgaaaaatagaTCTTTGTTCTTCAAACTCTCACTGAGAAGAACTGGCTCTCTCCTTTTCCAGTTACCTTCAGTTTCTGGTAATGAGTCAGGCTGCTGCAGTGAGCCTTTTTAGCTGTCTCTTCGTTGGAGTAGAACAGGAAGCAGACCCTGCAGTAATAACCCATCTTCACGTACTCCACGCCTGCAATGGAAGCAGAATACTCTAGagttaaacattatattaacaGAATTGTGAAGTGGTTTGTGTTCTCTTATCAGACCTGTCTGGAGGGGTAACCACAGCCCTAAGAAAGCTCAGGTTCTTCCGGTCACTGCAGGAAACTCCTCTTCAGCGTATCGCTACATCCTGTTCTTCAGTGGAATATTACTTCATTTAGAGAGAAGTTTGTGCAGTATTTATTACTTAACAGACTTAAGGgtcaattaagaaattgaaaGTTCAGTTGGAAAAAAAGCCAGCAGAGTAGGGGCTCCTACAGTACCAGGGTTGGGAACTTCTAGACCATGAAAATCTAGACTACATTCTTTAGTGCTCAGCCTTGCAACTAACCCAGAAATATTGCCATCAACTTGAAATGTTCATCTCGGTCTCTTACCCACGGGGTTGTCGGGCTGGTACGGCCCTAGAGTGAAGGGTGCCTGCTCAGGCTTCTTCTCAGGCTGGGGTTTGGTCTTGGGGCTCTCTTCTTTCACACAGACTACATCACTGACTCCATTAGAGGAGACTGCTTCAGTTCCTTCACTACTACTGGGTTCCTGAAAGACACAAATATCACGCTTTCTGTAATTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133292 True 1344 lncRNA 0.38 2 22759534 22761316

Neighbor

gene id symbol gene type direction distance location
AMCG00011398 NA coding downstream 16459 22738678 ~ 22743075 (-)
AMCG00011400 NA coding downstream 64707 22694141 ~ 22694827 (-)
AMCG00011393 NA coding downstream 158751 22564099 ~ 22600783 (-)
AMCG00011386 NA coding downstream 1544904 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1605732 21135426 ~ 21153802 (-)
AMCG00011401 NA coding upstream 19371 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 178424 22939740 ~ 22949010 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 579684 23341000 ~ 23345841 (-)
AMCG00011413 sparc,LOC105030028 coding upstream 589593 23350909 ~ 23361150 (-)
AMCG00011415 mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067 coding upstream 737510 23498826 ~ 23508364 (-)
G106527 NA non-coding downstream 62688 22696587 ~ 22696846 (-)
G106509 NA non-coding downstream 105876 22650500 ~ 22653658 (-)
G106454 NA non-coding downstream 831167 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 884408 21874812 ~ 21875126 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 959608 21795625 ~ 21799926 (-)
G106587 NA non-coding upstream 101292 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 332975 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 415164 23176480 ~ 23176756 (-)
G106604 NA non-coding upstream 415541 23176857 ~ 23177129 (-)
G106606 NA non-coding upstream 415912 23177228 ~ 23177579 (-)
AMCG00011399 NA other downstream 5918 22743430 ~ 22753616 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 205397 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2891632 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3346519 19410368 ~ 19413015 (-)
G105890 NA other downstream 3654265 19102293 ~ 19105269 (-)
AMCG00011409 NA other upstream 291997 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 631788 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1052541 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1067981 23829297 ~ 23835074 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 2250889 25012205 ~ 25018332 (-)

Expression


Co-expression Network