G106885


Basic Information

Item Value
gene id G106885
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24986805 ~ 24991176 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133694
ACCAGACTCCTATGTATACTGGTATACATCATACATTTATTAGTGAACAACCCTCTCAAATCAGccacaacaattaaaaaaaatatgattgcaCTACTCGGTAAAGCAGAACTAGcaactttcatttaaaaaaagtacaaatcttAAAAATTTCAATCGGTATacagatgtatatataatacaatataactAGTTATATGTTAAATGCTACAAACAATATGATTCcaatggaatgaaaaaaaaattatagcATTAAGAACCattttcctatatatatatattagctttttttttttctcaaatacaAACATGGCAAAAATGAGGTAACTGTAAATGTGCAAGTACCAAAGCAAAATATCTTCCTAACACAGAACACGTGCCCTGACCCCTTTCAGAAAGGCTGCCTAGAGCTCAGCCCAGCTCTGCCCAGGGGTCAAGGAGTATTATAACAGTAAACAATCCACTATCCCACCACAGCAAAAATCATTGGTAAACAATCAGTGGCATCTACGGAGCAATCAACAAATCACAAGTCCTAAAGAATTTTAGCTGCTTATTGGAATAAATTTTGCACCACACAAGCTGtgagattatttattaattaattggatcACTGAAAGACTACAAGattctatttttagttttccatACAATCAAACATGTGAACACAATCGTGTCAGTGTGGTATTAGATCTGAATAAGTATTATCTGTGCACAGAACTTTACTGATCTAAATGCTGTGCGGAGCCACAAGATGGCTCGTTAGAAACCTGACTATCATTGTTTTGGGCCACTACGTTTTTGGCAATGCTAAGAAATGTGCTGCCCCCcttccccaacacacacacacacacacacacacacacacacacagtttccaagcaatatattttaaaaacaggacTTAACGCTTACAACGATAAAAGGAATGCGAGGTTAAGACTTTCCGTTGTgtgattaaagaaagaaaaatgccgTTTTAATACAGCTATTCATTTACAATGATTGCAACCATTATCTCAAATTGccaaaaacaatatgcattagGAGAAGATACTTCTTGAAAGCAGCTATGATGATAGCAGCAAAATGAAACGGCCAATAACAGACAAACCACTTGAGCTACCAGACTGTTCGATGAACCATCAGATTCAGAAGAgagttaaaatgtaaagtaaaagcTTCCAATATTTTTGGTTATTCTAGAGACAGAAGGggttcaaaatgttttacaaaaagccagttgtgcatttttttttatttttttttaaagaaaacctaTGCTGGATGTCTTTAAATTGGATTGTATATGGCTACAgacttccattttgttttaggCTAGCTTAAAAATATTACTTGGACTTTTTATGAggggaaaatgaaaatataagaGGATACGGTTGgcaatgttttgttaaaatagaAATCGGAAGCGAGAAAATTGGCATTTGAAAAAAGTTAAGGCGTTTTGCATTTTCGTTTGAGTGTCTCACTTCTGCCCATGTGTCTTCAAGTTCTGGTGACTGCAGACCATGTTTTGTGGGGCACTAGCTCTGCATgctgttaaaatacatgttagTTCCATAGCAAACTATTGCATTCCGCTATGTGAATGTAGCAACATACCTTACAATAGAACATCTAGCACCAATTTCACTATATGGCTTTCAAACATCTAAGTTTCCCCATTCACCACGTCTACAGTCACCAGAGCGACAACACGACGATTTCAGAACCCCTTTTGTGAGCCCAATTTTCGACAGGTATGTTTCACTAAATCGGGAGTCCTAACAGTGTGAAATCCTCCGAATGGTGACCGACTActaccaaaataaaatcttgcaGTCCTTCAAGtgtgttacaaatgtgtgcagtacagtgcatgGCAGTTATCAGCTGAGCACAAAGTCCCCCCACCCAAACCCACAGCCAACTAGAGCTAGCTAAAAACCAGTCCAGAGCTGGTCAGACATGCATGCATattatgcacatttaaatattttgttcccCCCTTTCTAGATATCTTTCACTCaaaatacacacttttttttgtaaatcatgCAAACACCTTTAGGATAAGTTTGGAAGTGGTTTAGGTAGGATAGTGTGTGCAaaggcacacatttaaaataggaACACGaccagtgtatatatatcattcaAATACAAGAACACAGAAACAGACCTTTAACAGTTAGATTAACATACACTCTGATGATGGGCTGCAGTGACACATTGCctcttttttaaaaattatttataagttttctatttttttaaacttttaaaatctttttttttttgcttgcatGCCTGTCTTTAAAAGATGCGATATCCATTGCTctctgcaaaatgaaaaaaaaaaactaaacaaaaaataaaggttgAACTGGTTGCATTATAAACCCTATATACGGCCTGAGGAAAAcacacagaggaagaaaaaaataaataaatcaaaaaaaaagaaaagacatccCCTTCATGGAATCATTCCCATTTTGAAATTGactgttttcctttattttcatttattaactGAAAGACCCTGAGTGAAAATCTCTTAAAACTCACAAAattcacaatattaaaataggaaaggtttatatatacatataccgGCATacagatatgtatgtatatatatatagatatagattcATTATCTAAGTTGTGGGATAACTCCTTTAAATGGCTTTTGATAAAGGGTCACTTGAGACTTAAGCTCTCTATATACACAGCTGTGCCAGTGTATATTTCAGTTCAAGAGGGGAAAATACATCTCCATCTTTAGGGTAAAGACTGCCAATAAGTGCTAGGTGGGGCAGCATTACAATGGGTCCTCATTACATACAAAGGATTTTGAGAAGACCTCTGAAACCATTTAATAATTCATGCACTGCCAGATTACGTTAAGGTCCGATTCAAGTCCAGTGCATTACTGAGCTGACATATCCAACTCCAAGTTTAAATCACagaattttgtgtttgttactgTCGAATAATCTTGAACTCGCTGCTGTATTAATGTTGCCAAACACAGGGTTACCTTATGCAATACTTTTCAAGTTGTTTAAACATTCTTCGGTCTTCAAAACAAGATGATAAATTTAAGCCGATATCTCCACAGCTACTTAAAAACACTAATCTTTTTTTATACCTCTTACACAAGGGTTTCTGGATACAACCAAATTTCCTAAAACACAGAACATACTCCGCTAACATGCCTCATGTTAgtacttcacttttttttttttctttttccataaGATAAAACcatcaaatcatttaaaaactgttgaGAATCTAAAATAAGTGGAAATGACACAAAGATTATTTGTTCCGTTAAAGAGAAGTAATACGTTTGTGCTTGTCAAGGTCTTGAAAAGGCAGAGCTGAAAACTAGAAGAGTATATTGAATATTTGGCTCACGAACAAGGAAAAACCTGGCCTCCCCACACTGGGAAGAAGTGTTCCACTTAAAATCGGCACTCGTCGCAAAAAATATTGCTTTCTGCAGAACGCCACGAAGCAAGCTTCTCCGGAAGTCACCTGTGGTTGTCCCTCACTACCACCTCTGCCATCCCCATTCCAACCACCGGGACAAAATGGCAGACGAATGTCACTTGCTCGACCTGGGGCTCTCGCTTAACCTGGCatttccttttgattttgaaacGTCGGTGTTCTTGATTGAAATATTGCTCTTCTGAAATCCACAGTCCATGCAAAATGCTCACACGCCCTGAAACAGCTGCCATCCACAGCAACGGCTCCCTAAACAGGGCGAGCAGTGTTCGGCCAAGGTTGGGCCAGCTAGCGGTGCGTTTGTGTGGCGGCAGCAGCGGTAGAGAAACAGCCGTGAAGTCCCATGTCTTTCTTTGCTGCCGGCTCTGCAGGGAAGCGAACTCTTCCAGAGCAACGATGGCAATTCTCTTCCTGGACTCTTGTCCGTTAAAGGGGGTGTGGGGGCTTCCTTAGAAAGTTTTCATAAACCGACAAGGGAATTTCCAAATGAATGTACGTCCATCGTCCCCAATCCTAgcaatatattgtgtatatatattttttatacctCAGGCCTTAAAACGATACTGCACCTTCTACCACTGCAAATTAGACTTTCACAATAGCATTcggcaattaaaaaaagaaaaccaaaaaaggagagaagaaacaaaacaaagaaaatatcaaatacattattgCGTAACATACATTATTAACAACAAGTCACTTTGCCCATCACCTATACAAACATGCACCTCTTAAAGTAAGACTTTCCTTCAGGTCAGTGGAATGCTCCAGTTTCTTTCCAACAgcccaaacttttttttttttttttttagttttgtttcttttcgtTTTTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133694 True 4372 lncRNA 0.37 1 24986805 24991176

Neighbor

gene id symbol gene type direction distance location
AMCG00011442 NA coding downstream 29159 24915216 ~ 24957646 (-)
AMCG00011436 lrrtm2,LOC107750357 coding downstream 782482 24202755 ~ 24204323 (-)
AMCG00011433 NA coding downstream 883880 24089272 ~ 24102925 (-)
AMCG00011432 NA coding downstream 986347 23994138 ~ 24000458 (-)
AMCG00011431 tspan17,LOC107680656,LOC107749748,LOC107594893,LOC107653321,LOC106612270 coding downstream 1007042 23966119 ~ 23979763 (-)
AMCG00011446 faf2,LOC102776530 coding upstream 1172 24992348 ~ 25003276 (-)
AMCG00011448 LOC107667449 coding upstream 57999 25049175 ~ 25054840 (-)
AMCG00011447 NA coding upstream 64219 25055395 ~ 25071697 (-)
AMCG00011454 LOC103356984,LOC101466388,LOC100710497,LOC102193786,LOC102784017 coding upstream 124381 25115557 ~ 25116417 (-)
AMCG00011456 NA coding upstream 690739 25681915 ~ 25705668 (-)
G106862 NA non-coding downstream 67608 24916164 ~ 24919197 (-)
G106817 NA non-coding downstream 404631 24581956 ~ 24582174 (-)
G106723 NA non-coding downstream 1189586 23795680 ~ 23797219 (-)
G106682 NA non-coding downstream 1395496 23591101 ~ 23591309 (-)
G106665 NA non-coding downstream 1469002 23517378 ~ 23517803 (-)
G107035 neurl1b non-coding upstream 1014803 26005979 ~ 26006456 (-)
G107037 NA non-coding upstream 1018344 26009520 ~ 26012447 (-)
G107038 NA non-coding upstream 1024808 26015984 ~ 26016680 (-)
G107057 NA non-coding upstream 1103629 26094805 ~ 26127765 (-)
G107082 hspa9 non-coding upstream 1204936 26196112 ~ 26197833 (-)
AMCG00011427 NA other downstream 1151731 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 1169262 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 1497163 23393104 ~ 23489642 (-)
AMCG00011409 NA other downstream 1925839 23053313 ~ 23060966 (-)
AMCG00011399 NA other downstream 2233189 22743430 ~ 22753616 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 21029 25012205 ~ 25018332 (-)
AMCG00011465 NA other upstream 1026000 26017176 ~ 26019400 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 1515767 26506943 ~ 26516507 (-)
G107713 NA other upstream 4633908 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 4895040 29886216 ~ 29920020 (-)

Expression


Co-expression Network