G106906


Basic Information

Item Value
gene id G106906
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25047524 ~ 25049147 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133720
GCTACATCAGATTACTGGGAGAGAAGAATTAcatacattgatttgttttctccaaTTGAAACATCTCACCTAGCCGTGAGGAGTTTGCTTTAGACACCTAATTTGAAGGCACGGGCGTCACTCTTCATGGCTTTatctgcattaaaaatgtataaatactaaTGTTAGTCGGCAAAGACAAAGGTAGCCTAAAGTGAAGCCTCAATAAATAAAGGGGGTTAAAAGTCCTGATAACTAAACCATGGCATAGTGGAGAGTGAATGTTTGGCTTTGCTGGGTTTAACCAATACTGTAAAATAGGACtagaatgaaaaatacatctgcaaGATTTGTCCAAGAGTCATGTGGAAAaagttacaataaaacaaaaacaacagggtCAGTGGTGGCTAGATCTTACATTCCTATTCCCATCTACATTTTTGTTAAGTATTAATAGACTAAACTGAAACCGTGACATTTTAGGTCAGAAAACGGAGATCTGCTGGTTCAAGGTTCTTACTTTTGCATTGCGTCTCCAGGAGATTAGCGGAGAAGGGATTTTGTAGGCTGCTTGTATACCACACACAGGCAGAAACCCATCAAAACAGAAGCGCTGACATAACAGTAAATGTCACAGATGTGACGCATGACATCCTACCCTCATATTTTCATGATATCTTATGAAgtgcaatattgttttaatacaacTTTGGGTACAGTCCCTTACTTTTACATTAATCCAAAGCCAGATTCACTAGAAGGATCTCGGAAGGTTTTGCAACACATGACGCATGTTCACTTTAACATGCTTTGCTACTGCTTTCTTTCACAGTGCtcaactgaaaatgaaagcagGATTTTATAAATCCACCTTTCTAAACTCAAAAGTGGTCTTTACCGCCTTGCTCACAGGTCTATTTTGCTTCTTCCATCAACAGTTATAATGTGATGGTGTACCTAAACATATCATGAAAGAGGACTTGATAAGAAATGAATCCAGACTTCAAggacaaattatacatttatacatacaagTAATTGTGTTGGTAAAATAGTTGTTTGCTTATCTTTCATTATGATATTGGACATATACGTCAATAAGGCGTTAAACGATTGCCgttgtaaaacaaaaaggacaaaaaaaaatcctagaCATTCTATATTGTTTGTTAACAGAATACGAGAGCTCAAATAAATACAGGTGCTCCTCTGGGTTATGATTTTCTATATCGCTTACACAAGACAAGCGGTTAGAACTGCCACATCAATTAAGCTTGTCAGCTGAACTGGTAAGAAGACCAGCGAGTATTGCCTGACAGAGCGAAGGTCTGAAAACCACACAAAAGAACCAAATATTGTAAACGGTATTGTGGGCCTCTGTATGACCTTCGCCAATTCTGCATAGAAATACTAGGTGGGCTAATGCTTTCCATCCTGAGCAGGAGGGATTcgtttttaacatttcatttgcaCTGAGGCCAGGGCCAAGACTGGCaccattaattattcaatggAGTTCAGAGTGGAAGACTTGGGATTTGCAGGGAGGTTCTCACAAGCCTTTCCCTAATAACCCAGACATTCGTGCAAGTTACCCAGAGGAATTGCATAAATTTGGAATGCTTGAAGTGCATGGTAAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133720 True 1624 lncRNA 0.39 1 25047524 25049147

Neighbor

gene id symbol gene type direction distance location
AMCG00011444 prelid1 coding upstream 310 25044205 ~ 25047214 (+)
AMCG00011443 cltb coding upstream 32655 25003664 ~ 25014869 (+)
AMCG00011440 rnf44 coding upstream 60801 24971547 ~ 24986723 (+)
AMCG00011441 NA coding upstream 130584 24915075 ~ 24916940 (+)
AMCG00011438 NA coding upstream 160763 24881356 ~ 24886761 (+)
AMCG00011450 NA coding downstream 22590 25071737 ~ 25093488 (+)
AMCG00011451 ddx41 coding downstream 45382 25094529 ~ 25105105 (+)
AMCG00011449 NA coding downstream 57181 25106328 ~ 25114493 (+)
AMCG00011453 NA coding downstream 120353 25169500 ~ 25170670 (+)
AMCG00011452 NA coding downstream 121561 25170708 ~ 25171196 (+)
G106874 NA non-coding upstream 56287 24986838 ~ 24991237 (+)
G106863 NA non-coding upstream 103846 24919851 ~ 24943678 (+)
G106871 NA non-coding upstream 106701 24939022 ~ 24940823 (+)
G106742 NA non-coding upstream 1076341 23941012 ~ 23971183 (+)
G106718 NA non-coding upstream 1214224 23829289 ~ 23833300 (+)
G106946 NA non-coding downstream 288405 25337552 ~ 25337767 (+)
G106947 NA non-coding downstream 322332 25371479 ~ 25371745 (+)
G106961 NA non-coding downstream 616977 25666124 ~ 25667782 (+)
G106966 NA non-coding downstream 625269 25674416 ~ 25677419 (+)
G106973 NA non-coding downstream 649105 25698252 ~ 25720586 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 1202613 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 1294522 23748674 ~ 23753002 (+)
G106618 NA other upstream 1690965 23356062 ~ 23356559 (+)
G106613 NA other upstream 1705759 23341308 ~ 23341765 (+)
G106242 NA other upstream 4680301 20361208 ~ 20367223 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 558839 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 1307020 26356167 ~ 26360775 (+)
G107202 NA other downstream 1721291 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 1768905 26818052 ~ 26842792 (+)
G107394 NA other downstream 2663059 27712206 ~ 27727867 (+)

Expression


Co-expression Network