XLOC_006074


Basic Information

Item Value
gene id XLOC_006074
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30920554 ~ 30928661 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013627
GCAGACCCTTGTTTCCACCATTCTGCATTTAGGGTATTGCTGAGAATCTCTGCTGTGATGAACATTCTGAGTCCACGCTTCGCTACCCGTCTCAAGCATATCCCGATGAACTGTTAGCGCAGCCGGTGTTGACATTTCAGATGATGACCTCAAGGGTGATAATGAGGATGCAGCCATTGGCAGAAAGCCACGATACAGCATGTAAGGAGCATTTAACATTTCAACTTGTGCTGGCTGTGTTAAAGCACCCTGAGACCTCTGACGGAcattcaactgtacatatttacCAGTTTCAGGGTCATAAAAAGTCTTTGTCTTAACCGGTAGTGGTACGTCCACCATAAAGTACTGCCCTGAGTTTGGGTCTTGCAAAAGCTTTCTCTGTGTCATTGGGAAAGGTTGCGCCACTATACTGTGTGCAGGGGGGGAGTAATTTGGCTGGGTGTCATATTGTGAAAGAGGGGGTGAGGCATGCACCTCTTGATGTGATGACGGTACATCCGATGGTGAAGAGGGAACGCTGGAGATGTTGCTGATTGATTTGGGTTCTGGTTGTTCTTGGTTTTCAGGTGCTAACTTCGGAGACTCAGACTTTTTGAGACGTCTTGTTGTAAGTCTTTGCGCTCGCCGAAGAGCTTTTTCAGATTTGGGGGGCACCGCTGGAGGTTTCCCCAATGATCTTATATCACTACAGGCTGATTCTGGCCTTTCGTAGCAGACTGAATCTGGTCGTTCATAGCAGGCGGATGCAGGCCTTCGGTAGGAATCTCTGTAAAATTCATTCTTAGGCATGAAGGCCATACTTAGGTCGGCCAGATCTATAGGTCTCGCTGTACAGTTTTCTAAATCTTCCGACATTGTGCTGATGACCGAACGGGTTTCTTCTTCCTCAAAATGTTGGCTTCTTCTTTGAtagctttttaatttatttgtcgAGTAATCTGCTATGGACATGTTGTTATGGAGTGTTTCCTTTACTTTTTGGAGTGGCTGGGTAACAATAGCTGGCTCGTGTAAGAGAGGAAGGTTAGCAGACTCTTTGGGATGAGTTTCATCTTCTTTCTCTGAACCGCTCAAGTGTTCCTTTGGAGAACCAATCCTCAAGTCATCAGAGAATGACCTGTGAAAGCGTGGCTTCACAGTTTTGGTCACAGAAGACGGTCTGATGGTATTATCCTTCACTCTGAACATGGTGGGTTTTCCCATGGCTGGAGAAGAAGAGTTGGATCGGGGTCCTGTCATGTTAGCTTTACCATATTCTGTTAGACTTTGCAAAGACAAGCTATCTTCCTTTTTGTCTTCCTCTAATTTGTTTTGGTAAATTTTGGGACTTTCATGAGGTGGCTCGGGTGTGTAATTTGGCTTTGGTTCAATGTCAAGAGCATTCACGGTGTAATATTGTAGTTCTTCCATTTCTTCTTCTGGTGGTGATGCCATATTTATTTGGTTGTCTGCTTGTTTTACATTACCCAACACTTGTCTTCCTGAATGAGAAAAGCTAGTCTTCTCCATTCTTTTATCATGAGCCGGTTGTCTTGATCGGTTTATTGTACTCTCAGCTTGCAATGCTGCAATATTGTCTCCTTGGGGATTCCTGGACTGGTATGTTTTGTAACTTTCTCCTGTTTTTGTTTGCTCCAAAGTTTGTTTAGTATTTGATTTCCTATGAATTGCTGGAGTCCTTGATTGAGTTGAAGCAGCTCTACCTTGTGAACCTGATGCTACCAGTGATACAGGCGTTGCTTCAGCTATATTCGTACTGGGATTGTGCTTTTGGGCTAATGATGGTGTTTGCTTGAGATTTTGACCTTTTTCTCTTAAAATGGCCTCTCGTTTTGAATCTTCCCATATATCTCCTGACACCTTTCTATGAGAATCTTTAGAAATTCTTGAAGCCGGCTGATCATAACTGTTGTAGAAGTCCGTTTTTGGAAATATATCAAGCTCTTTTGTGTCATCTTCTGCAGCAATAACTTTCAGTCGAGCATAGTCTGCGATTGCTGATATTTCAGGTCTAGTCACCTTTTTGTTCCTCTGTGTAGCCTCATTTTTGGATAACATACCTTCTTTCTTGGCGTCCTTTTGATATATCTGTGCATGTTCTAGTTCATAGCTTGCACTTCTTTCTTTTTCAGGCTCCAAACCTCTCCCAGGCTGATTCTGGTTTGTATTAGGTTGATGAGCTTGTTTTGTCTCAGTAGCTTCAATATGTTTTACTTGCTTTCCTTCGAGACTGCTTCTGTTTTCATTTCGAACTTTCAAATTACCATCCTTTTGTCCATTTTTACTTAATACAGGCTGTTCAATCTTCCTTTCCTCACTATTCAGTGCAGGTTGTTTATTATCACAGACTTTTATATGTTGAGACTGAACTAATGCATCTTGTTGATTAATTTCTGGCTTTTCTGATTCACTTGGACAATCTCTCTTAAGTGGTTTGGGTGCCGTTTCACAGAGCCCTTTCATAATGTCCACAGTTTTGGGTTCATTTTGGGCTGCAAGGGTCTTTATTGGTAACTTCTTTAGCTCTGCAAAGTCTTTTTCACCCACATGTTCAGCCACAACAGTTACTTTCTTTCCTTGTAGAGTTTTCCTCTTTATCACTTCATGTTGGTTTTTGTGGCCTACCATGAATTCTTTGTTTGATGACACTTCCTCTGTAGACACTTTTATGTCCTCTAAGTGAATTTTTGGGGCTTCAAAAGAAGCCTGGTTGTGTTTTACAACAGTACACACATCCTCACCAATACTGCTAACTTGATCCTTGTAATTATTAACATGTGTTGTATCTTTTGAAACCATCTTCATCTGGTTAGTAATTTCATGACTCTTGTTCAGTTCAACTTGTAACTTCTCTTGTGACCTTTTCACCTCCAAATTCTCCTTTCCATTCTTTTGCAGAGTTTGGGTATCTTTGTGTGAGACAGATTCTTTTTTCAAAGCCATTGTAGAATCCTGTTGTTTATCCTCATGAATACTTTTCTGATTTTCTGAATTAAACGTTTCCCTTCTGTGTATTTTATTCGGATGTAGCATTAATGTATCAGTTTGATTAAACATTTTCTCTTTACCTTCCACCTCTTCAAGCTTCTTTTCAGCTTGGGGTATTGTCTTTTTGGGAATTTTACTTTCAGTGAGTTTGGTCTTGGCTGTGTCCTTTGCCAAGGATGTGTTGGAAACGGATGCTTTTAAAACATCAGATTTTGCTGCTCTTGTTGATTCACACATTACCGATTGTTTAGTCATTAGGGattcattgtctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013627 True 3263 lncRNA 0.41 2 30920554 30928661

Neighbor

gene id symbol gene type direction distance location
XLOC_006073 drgx coding upstream 289 30912117 ~ 30920265 (+)
XLOC_006072 ercc6 coding upstream 10538 30874153 ~ 30910016 (+)
XLOC_006071 CR762493.1 coding upstream 83778 30836656 ~ 30836776 (+)
XLOC_006070 cxcl12a coding upstream 100839 30804367 ~ 30819715 (+)
XLOC_006069 cxcl18a.1 coding upstream 221185 30696286 ~ 30699369 (+)
XLOC_006075 vstm4a coding downstream 22494 30951155 ~ 30967784 (+)
XLOC_006076 lrrc18a coding downstream 73997 31002658 ~ 31005889 (+)
XLOC_006077 si:ch211-223a10.1 coding downstream 141520 31070181 ~ 31090040 (+)
XLOC_006078 arhgap22 coding downstream 179673 31108334 ~ 31139766 (+)
XLOC_006079 CR931802.4 coding downstream 215644 31144305 ~ 31191814 (+)
XLOC_006067 NA non-coding upstream 242911 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 408831 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 668697 30251741 ~ 30251857 (+)
XLOC_006056 NA non-coding upstream 1028734 29889189 ~ 29891820 (+)
XLOC_006101 NA non-coding downstream 877859 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 1026559 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 1176604 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 1463722 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1917832 32846493 ~ 32846609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_08926039_08935452 NA coding CI01000012 null 8925048 ~ 8935861 (+)