G107082 (hspa9)


Basic Information

Item Value
gene id G107082
gene name hspa9
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26196112 ~ 26197833 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133934
CTTGCTTTTGAGTCTACCAGCCTCCTCACCTTCTTGTACGCCATCTCGAACAGCTTGAGCGAGGCCTGCTGCAGGTTGCTGGAGGCCTGCTTTATGTTCTCCCCCGTCTCACTGTCCTTCCGTGCCAGCAGCTCCCTCACCTTGGCGATCTCTTCTTTCAGTTTGTTGCACTCATCTGCAGGGAGCTGATCCTTGAACTCCTCCATCTTGGACTCCGTGTCGTGGACAATCCCCTCCGCTGTATTCACCGCCTCAACACGCTCCTTCCTCCTCCTGTCCTCCTCAGCGTACTTCTCTGCATTCTTGATCATGTTCTCGATGTCGTCCTTGCTGAGGCCACCAGAAGACTGGATTACAATCTGTTGCTCACGGCCCGTGCCCTTGTCCTTGGCAGACACGTGTACAATTCCATTGGCATCAATGTCGAAGGTCACCTCAATCTGGGGCACTCCTCTAGGAGCAGGGGGGATCCCCACCAATGTGAACTGTCCCAAGACCTTGTTGTCTGaagccatctctctctccccctggcACACCTTAATCTCCACCTGGGTCTGTCCATCCGCAGCAGTGGAGAAGAC

Function

symbol description
hspa9 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Acts upstream of or within fin regeneration and hemopoiesis. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; eye; midbrain; musculature system; and segmental plate. Human ortholog(s) of this gene implicated in Parkinson's disease and autosomal dominant sideroblastic anemia 4. Orthologous to human HSPA9 (heat shock protein family A (Hsp70) member 9).

NR:

description
Ribosomal RNA processing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133934 True 581 lncRNA 0.55 5 26196112 26197833

Neighbor

gene id symbol gene type direction distance location
AMCG00011474 NA coding downstream 262 26191126 ~ 26195850 (-)
AMCG00011469 NA coding downstream 33234 26138966 ~ 26162878 (-)
AMCG00011470 hdac3,LOC107688598,LOC102780161,LOC107746152 coding downstream 76097 26113869 ~ 26120015 (-)
AMCG00011463 ergic1,LOC107679115,LOC107660430 coding downstream 297285 25877496 ~ 25898827 (-)
AMCG00011459 NA coding downstream 415020 25779962 ~ 25781092 (-)
AMCG00011475 csnk1a1,LOC106604944,LOC107593197,LOC106611977,LOC107554841 coding upstream 122188 26320021 ~ 26334761 (-)
AMCG00011482 NA coding upstream 150755 26348588 ~ 26362055 (-)
AMCG00011480 NA coding upstream 164558 26362391 ~ 26368116 (-)
AMCG00011481 NA coding upstream 171488 26369321 ~ 26369867 (-)
AMCG00011479 NA coding upstream 172340 26370173 ~ 26377379 (-)
G107057 NA non-coding downstream 68347 26094805 ~ 26127765 (-)
G107038 NA non-coding downstream 179432 26015984 ~ 26016680 (-)
G107037 NA non-coding downstream 183665 26009520 ~ 26012447 (-)
G107035 neurl1b non-coding downstream 189656 26005979 ~ 26006456 (-)
G106885 NA non-coding downstream 1204936 24986805 ~ 24991176 (-)
G107166 NA non-coding upstream 114010 26311843 ~ 26329609 (-)
G107167 hnrnpa0,LOC105905838,LOC107664751,LOC107567479,LOC107598338,LOC107756703,LOC107741073 non-coding upstream 190379 26388212 ~ 26409375 (-)
G107232 NA non-coding upstream 635732 26833565 ~ 26833850 (-)
G107233 NA non-coding upstream 640334 26838167 ~ 26842786 (-)
G107237 NA non-coding upstream 712682 26910515 ~ 26910758 (-)
AMCG00011465 NA other downstream 176712 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 1177780 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 2361038 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 2378569 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 2706470 23393104 ~ 23489642 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 309110 26506943 ~ 26516507 (-)
G107713 NA other upstream 3427251 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 3688383 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 3993740 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 5932661 32130494 ~ 32205554 (-)

Expression


Co-expression Network