G107084


Basic Information

Item Value
gene id G107084
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26199950 ~ 26202619 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133936
CCTGAGGCGCACTATCGGCCTCTTCATTCACAATGCACGAAGTTAGAGTGGAAGGAAGTGGTCTCCATGCGGTCCCTGCTGTGCTGGGAGAGCAGACCCAGATTTGTGAGCAGCCAGGGTCACTGATGTAAGGCTCCTTGGCTGCTGTGTGAGTTCCTGACCGGGGTGCTTCGTATCGAGGGAGCTGCTATAGATGCTATACAAGAGCTCAGGACACTGGAAGTCTGAAGAGGTGGATCTCCCTCATCGCATGGATGGAGTACAGAGGGAGAGGCACACTTCCCCATCCTTTTAAAAACCACAAATTGTAGCATTTTAATGtag

Function

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU133936 True 324 lncRNA 0.52 4 26199950 26202619

Neighbor

gene id symbol gene type direction distance location
AMCG00011473 hspa9,LOC106604950,LOC106611979 coding upstream 601 26189132 ~ 26199349 (+)
AMCG00011467 NA coding upstream 64172 26127315 ~ 26135778 (+)
AMCG00011468 LOC103355626 coding upstream 87096 26081951 ~ 26112854 (+)
AMCG00011466 NA coding upstream 164582 26034232 ~ 26035368 (+)
AMCG00011464 neurl1b coding upstream 188056 26005894 ~ 26011894 (+)
AMCG00011471 fgfrl1b,LOC107740189,LOC107593239 coding downstream 37754 26240373 ~ 26242027 (+)
AMCG00011472 fbxo38 coding downstream 43308 26245927 ~ 26264527 (+)
AMCG00011483 hnrnpa0,roa0,LOC107598338,LOC105905838,LOC107567479 coding downstream 185675 26388294 ~ 26397982 (+)
AMCG00011478 NA coding downstream 199346 26401965 ~ 26409373 (+)
AMCG00011477 klhl3,LOC106604937,LOC106611969 coding downstream 210682 26413301 ~ 26435458 (+)
G107004 ergic1 non-coding upstream 311112 25882692 ~ 25888838 (+)
G106994 NA non-coding upstream 404338 25795413 ~ 25795612 (+)
G106973 NA non-coding upstream 479364 25698252 ~ 25720586 (+)
G106966 NA non-coding upstream 522531 25674416 ~ 25677419 (+)
G106961 NA non-coding upstream 532168 25666124 ~ 25667782 (+)
G107098 NA non-coding downstream 74755 26277374 ~ 26292447 (+)
G107126 NA non-coding downstream 185129 26387748 ~ 26387984 (+)
G107128 NA non-coding downstream 244583 26447202 ~ 26451575 (+)
G107321 NA non-coding downstream 1264785 27467404 ~ 27468567 (+)
G107331 NA non-coding downstream 1294708 27497327 ~ 27501442 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 537771 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 2355039 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 2446948 23748674 ~ 23753002 (+)
G106618 NA other upstream 2843391 23356062 ~ 23356559 (+)
G106613 NA other upstream 2858185 23341308 ~ 23341765 (+)
AMCG00011476 NA other downstream 153548 26356167 ~ 26360775 (+)
G107202 NA other downstream 567819 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 615433 26818052 ~ 26842792 (+)
G107394 NA other downstream 1509587 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 2666523 28869142 ~ 28876355 (+)

Expression


Co-expression Network