G107128


Basic Information

Item Value
gene id G107128
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26447202 ~ 26451575 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134004
GGCCTCTCATTCCAGGAATACAGGCCTCAATGTTAATTTATTGCTTAATCATTCATGGCACAAAAATAGAAACAGTACAAGTTTTGCCATGCATGCCAGCTACACTGAGTCTAGCtcatacaaaacaaagcagacTTCTAAGCCAATAAGGAGCTTTTATACTGGATATGAGGATCAGTCAAGAGCAAAAggattacaaaaatgaaaatacaaaaacaataattaaaaaaaggaaaaatgttggATTGTACAGATCACAGGAGTGTAACACGGCAAAACAGATTATGTAAAAATACCTAAACAAGGATCACATTAACCTTTCAGATATTAGTAGtgccttaaaaaacaaacaatacaaaaaccaGGGCCGCATTCCCAGAATGCTGTGCAATATTCCGTCAtgaccccccagccccccaccgTTTCCCTCTCCACTGAGCAAAAGTCAATGAAACCGTTTCTGTATCATAGACGTTGCAATTTGTTAAGCGAGTGACATTTTCAGTAATAGTAAAATCATGTACAAAAACGTACACAGATTGCAGAGCTCTCAGACCACAGGAGTAGGAGGGCATCCCACCAGACCTGTCTGTCCTCCAGAATCAAAgactctctctgtgtctcctcaCTGACAGCCTTCACATCTCACTTCCAGAATCCCCAGTGCCAGTTTGCTATAGGCTCTTCAAGTGTTCTGAATTACCGGGATAATTGCTGATGTTATGTCAAAGTACCTTGTACCCACACTATAGCACactacatatttacatttgtatgctTCATACACATATCAAAAAGGGCAACAATTGTCTGTTTACTAGTACTAAAAcgtaaaataacagtaataattacTATGCTGTGAAGGTACTCATGCTGTGCGTTTGCTTCTGACATTTTTAATGCTCTTCAGACGGCTTCATAAGTGatgcattatttcacaaaaaaaaaaaacacaaacaaaaatgactttCTTCTCTTCACTACTGGGATTCTGAGCAAATAGAGTTATGCACATCACAGGTACACACACAAAGCCCACACATTCACATTTCATGTACGACAGAGACATCAGTAACACATTATGTGGACTTGACACCAAAAGACGCATTTCTGACAATGGCTTGTTTTTCCGATCACACATGGTTCACAAGTCAGAAACTGACCAGAGCGTACAGCTGAAGACTTTGGTCCGAGCCAGCAGTAGAAAgccaaaaaaaccaaaaaacaaaaaacaaaaaacaaaaagaaaagcccCTTTGTTATAGTTCAGCAGCTATGCTCAACGACAACTGGGAGAAGCATCTCAAAATTAACTCTTTGGTGTTTTACAATCAGCCTGAATTTGATGCATctcatttgatcaggatcaatgAAAagacttaaacaaaaacaaaccgaCACTGAATTATGGGGAGTTGAGATACTGAAggcaaataaaatcaaaacaatgatCCATCCATTTCCTATCTGCCCAACTCTggggagataaataaataaatcccagtgTGTGAGATCTGCATCTGCAGTTGCCACCATTTACTCCTAGTAACGAGCAGGCTGCAAATAGTCTGTTTCATTACAGTGGTACAAATCAGCCCTGTATAACAAGGTTCTGGAGACGGACAGTAATGGCCATGCTGTTACTGCTCTGGAGGCTGTACAGGTCAACTGTCTGTGTCACGCTCACCTATGTAACTGTACCagacacaaatacaatttaagctGCTACTGCAACAACACGTATCAACCCCTGGGACTCTCAGTGCTGGGGTCACCGTCACTTATACAAAGACCACGATTGCACATTtgctctgtgtatgtgtgtgttggtgaaCTTCATAAGAAACACAGAGAGCGCCTTTGTTTTTTGATCTCTACCAAACACAATGTCCAggttctcttttctttctatacctttttaagattgtttttcaAGTGCACAAGAGGCAtgcagtataaaataataataaaaaaggaaactgacACTTAATAATCAGCAGCCACGACATCAGGTTGCATGCAGATATAATCCAAGTGAGAATTCAGTCATATAtcgagagagaaagaaaaaaagcaccaGAGAAGAATCAGACAAGTATAACAGCTCCTGGTAACATAAGAACCAGCTTCCTGTAGAATAATTACAGAAGGCTGTCGAGTgtcaccaaaaataaaaaacaagtcaAACTATCAAACAACTGACTCTGCAGTTGGCGAGCCAGGAGAAGAGCTTTTACCACGGCATCGTAGTAAGTAATATCCGGGCGTCATCTCCACACACCCAGAAGGGAACGCCGACACATCTTTGTAAGTGCGCTGGAGTCCTCGCCTGAACTCTCTCTCAGGCACTGCTGCTTTAGCACTGCTGAGCTAGGGTTTCATTAATATTCCCCAGCCAGTGATGCCTGATCGCACTTTGCATAACTATGGTCACAGTTAAGCTAACTAGGGCGATGTGCCTTACAATGAATAACAATAAGTCTGTTTCACTATGGCTGTGCATGAAGATGGGTGACTGCTCTTGTACAATATTTTCACACACCAAATCAGTTCCGAGTCCCATTTCCCGTACGTGATAGATTTGTTACATGACGTAGTTACAGGGTAATCACAACAGCTTCAGAGGGTAATGAACTTGGACACCATGCTGACTGCTGTCAGAGGGGCGCAGAAGAGCTGAAAACAGACTACCTTTGCCTcactgattacactgtacagcaACCAAGATCTTTACAACCAGGCAACAGTTTTATGATTAAGGCAATACAGTGCTACTGTGATGAAGTGTGTCAAGTACTGTAGCTGTCTTCTGCTCACACCTGTGCCCCAAATTAggcaaaatgtgaaatagatGGGTCTGAATGGCCTTCTCCTGTCCTACAGTGCTCTTGGGACAGCTGCATTGTGCCAAAATGCCGAGACGAATACAACAGTGTTGTGAAGACTATGATATGTATGTGAATATTAGTTTGGCTTGGGGACACTGCTTGACAGCATGAAAGACACCCCTTTAGAAATTGAGAAGCAGGCCTTCATTTGTTCCCAAAGGCAATGCAGTGTGAAAACAGGGTTTGTCAGTGACTCGCCCCACCCTATCTACCAGGAGAGATTTTGGTGTCTCCTACAGCCCTCCTCCTCTGTGACCATGCAGAGTACTCCAATGTAAGCTGGGCAGTCCATGGCAAGACCCCAAGTGTCTGTAACAGTGACACTGGTACTGTAAACTCAGCAATAAATGGATACCTGCGTGCATTTGAACACAACAGTAGGCAAATGAAGTATGAACACCATAACTAAACCGCCGACAGTCTTTTCTTGCTGGGTTTTTAGATGAGCAAATTCTCTGTGAAACTCTGATGGCTTGCAGAGATCCAAGTATGTcgtaataaataaaagcagaagggaataaataaaataaaaaacttcatTTTGCAAAAACGTTGTCAGTTCTCTTGGGTAGCAAAGGAGTATGAGGCAAGTTTAAAATGATAACGTGTGTACTTGTATCTCAAGCCGTAGCTTTGATCTAAAATTCAGTCTTTAAGGTCATAATCACGGACAACTGACCTTAATGGTTTACAtctttagatatatatatatatatacacatacatatattcataaatatatactcacacacaaTAAAAGAATGCCggtattcaaaaacaaaagtaaagctCATAAAATGGATCCACATCTGTCCATGTGCCAGAAATGCTGTGGACTGTTGCCTTGGATTTTATAGAAGTGTTCAGGTCAGCACATGTTCGGTCCAAACAGTTCAACAGAGATGACAGGCTTCAAAATGACAGCCTTCCTTCATGCaagtttttcttcagtttttttttttttttttaagatttcccAGTGTGAGAAACTACTTGAAATTGAAACCGTAAACAAGAATCTTGAAacctggaagaaaaaataaataaaaatcttccagctgttaaacaaacaaaaaaaatattttcagcacTTCCTCAGTAAAAGGCCAAACGTTCATAAAGAAAAAGATGGGAGAGCAGGAAATGAGAGCCAAGCCATCCCAACATGCCTGGAGGGCTGAGAAGTGTGGTGTTGCTCCCCTGGGTGCAGCAGTCAAATGGGAGCTCGCTCGGGGGGGGTGTCTGAAGGCACTGGTTAGCAGTGCAGCTAGACACACACGCAGACGACAACCTGAGACACACCGGACCACGCCACTCGGATGAGCGCAGAGGGCGTCTAAATGGATTTGGAAGAATCCTGCTTGCTGATTAAAACTTCCAGCAGCCGGAGTTTGGCTTTGATCCGTTTGTATTCTTTGTATTCGTCCATCATAGGGGCGCGGTCTTCCTTTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134004 True 4342 lncRNA 0.41 2 26447202 26451575

Neighbor

gene id symbol gene type direction distance location
AMCG00011477 klhl3,LOC106604937,LOC106611969 coding upstream 11744 26413301 ~ 26435458 (+)
AMCG00011478 NA coding upstream 37829 26401965 ~ 26409373 (+)
AMCG00011483 hnrnpa0,roa0,LOC107598338,LOC105905838,LOC107567479 coding upstream 49220 26388294 ~ 26397982 (+)
AMCG00011472 fbxo38 coding upstream 182675 26245927 ~ 26264527 (+)
AMCG00011471 fgfrl1b,LOC107740189,LOC107593239 coding upstream 205175 26240373 ~ 26242027 (+)
AMCG00011491 LOC101077011,LOC100136477 coding downstream 458776 26910351 ~ 26923941 (+)
AMCG00011490 NA coding downstream 506567 26958142 ~ 26969283 (+)
AMCG00011493 NA coding downstream 607417 27058992 ~ 27067377 (+)
AMCG00011494 htr4,LOC108269380 coding downstream 736976 27188551 ~ 27195648 (+)
AMCG00011495 lman2 coding downstream 820023 27271598 ~ 27279308 (+)
G107126 NA non-coding upstream 59218 26387748 ~ 26387984 (+)
G107098 NA non-coding upstream 154755 26277374 ~ 26292447 (+)
G107084 NA non-coding upstream 244583 26199950 ~ 26202619 (+)
G107004 ergic1 non-coding upstream 558364 25882692 ~ 25888838 (+)
G106994 NA non-coding upstream 651590 25795413 ~ 25795612 (+)
G107321 NA non-coding downstream 1015829 27467404 ~ 27468567 (+)
G107331 NA non-coding downstream 1045752 27497327 ~ 27501442 (+)
G107382 NA non-coding downstream 1162386 27613961 ~ 27615738 (+)
G107402 NA non-coding downstream 1339291 27790866 ~ 27874138 (+)
G107408 NA non-coding downstream 1431520 27883095 ~ 27883396 (+)
AMCG00011476 NA other upstream 86427 26356167 ~ 26360775 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 785023 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 2602291 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 2694200 23748674 ~ 23753002 (+)
G106618 NA other upstream 3090643 23356062 ~ 23356559 (+)
G107202 NA other downstream 318863 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 366477 26818052 ~ 26842792 (+)
G107394 NA other downstream 1260631 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 2417567 28869142 ~ 28876355 (+)
G107741 NA other downstream 3246026 29697601 ~ 29699419 (+)

Expression


Co-expression Network