G107233


Basic Information

Item Value
gene id G107233
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26838167 ~ 26842786 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134131
TCTATTTTTTGCtcgtctttattttattttcctgtatacAGCACATTGttataaaaatactttcatgTTCTATGAGCTACACAGGAAAGCAGAATGCAAACAATCTTGTCTTAAGCATACACTATATTTCATGATGCAACAGTAGAGAATATATTatcaacacaataaatacaataaaaccatTAAGATCAATAAGCATTGAGACCCAACAAAGGGAGCCCAAGTATCTTTTGGACAATGCATTGGCACATTTGCTACGGACACACTCAGTGTTTTGGCTACAGTAACGTCTTcattaatacaattacacaatgcATTAAAGAGAAAGCCTGGGCTCCTAAAACAGCTTGAAGGACATTATTGAACAGGCACACATTACGATAAATACTtcagtacaaaaataatttcaccTCAATCAATATTGAACACGGTCTTCATTACAAGATGCTCATTATGACGGTTTAGCAGCAATGCACTACAAATTCCAAGTGTTGGTTAGAAGCATAAAAATACAGTGCGTAACTCATAAGGTGCCTTTATCATTCTGGAGGTTTACTTCACATTTTCGACGTTAAGAACATTCTGTAAAGCTCTCAGTAATGCATCCCCCCTGAAAACAACATCAATCCCCTGCAGCATTTACATTCTCCTGTTccaatacattcattttgacACTTTACAGCAAAGAATGTATGGAGCAATGCGTTTAAAAAGTCGCAGGATCCAAATAGCTTGTTCGGAGTCAGGCTTCATCACAATAATTGCTCTTTTCCCACCACTGCACACTGTCGGCAGGAACAGAATAGATTGCAGAGCAGTGCTGGCCCTGCAAGCCGATACACGAGAGCTCCGAATCAGATAGAGAAAAACGATGAAAACCTATATGCTCAAGCAACACAAGACCTCAGAAAGATCAGAACGCGATAAAGGTGGGGAAACAAACAATTCCGAAGATCTTCGTAGAGACCTGCCAGGAGTCTAAATCGCAGGTGAGAGGGGCCAATTCCTGTGTGGACTGGGGACACTGTCTTCCTGTAGTAAAAAATTGTCATGGCGACCAGATTTATCCATCTGCTTGCTAAGTTGGCCTTACACAGCAGATGGGGCTCACTAGCAGGAAATTAAGGCCATTCACACTTAGTGAGCAGAGTCACGGATCTGCCAAGTGCAATCCGATGCAGGATTCAGACAGATACAGGTTTTAATGGCAGACTGGAGGCCGATGTCGAAAAGTGTATACTAATTCCCACTGGAATTTCAGACAAAGCCCCCTCCCCAAACTGTCAATGACCTTCCAAAGTCTGTCAGGTATTTGGACACAATCTTGTAACAGTCCTGACTTTGAGTTGGAAGGGAATTGTTAACATcaatgtaaataacaaacaaataaaacatgacaaaaagcCAAGCTCACTGAAAAACACGGCCACAACCTTGTAGGTTGCAAGTAAAAGAAAAGCCTTTTCTCAAGTTCTAATAACTCCACCTCCTTTTCTTGAGGGGACTACTGATTTGGGAAAATAGTAAAAGTTTTCTAACCAGAAAGGGGTTTGGAAAGGCACagcaaccacacacacacacacccatgcaCAAACtcgcactcactcactcacacgaCGGTGAAAGGAAAAGACTGGCATTTCTATTGCCATCATTCACAAGCTATTAAAATAATTCCCCCTCATTAAAACCACTCCGAGTCCCCGCAGACTGCAGAAGAATACAGACAGCCGAGTGAATGGCAGGGCCTGGTGTGAAAGCTCCAGCATGGGGGACTCTACTATATTAAGCACCAGTAATTAGTAACTGGAGATCTTCCCAGTCTCACAGTGGATAAGCATTGTTTAACCCAAATGGGGTTGTGTAAGAGATCAGCTGACCCAGCCTGAATAAACAGGGGTTCAGAAATGTCACCAGCTCGAGGCTTGGCAGCTGCTGTGTCCGATGCCGACATGAGCTATTTATATAATGCAGAATTTAATACATCATCGTGGCGCTCCACAGACTCCCGCTCGTAGCGCTCTACAGCTATGTTTAGAGAAACCTAGGACACAAAGCTAGGAATAACTTCCTTCAGTGGTGAGCATGAGTTTTTCCAGGGCATGAATGGAAGTCCTGCGAGGAGCTCTCTCTCCGCGGATCTGCGCGGCATTGCCATATTGAAAGTGGCTGACAGGTCTACGCGTCACAGCTGGCACAAACGTGGTGGCTTCAAGGAACTCATGGGGCATGCCGGGTCTGAAACTGATATTTTATACTACAGGAGTGGAaaaactggggggaaaaaggaaTCAAAATAGAATACTACTCCTAATCTTTCAGCACGAGGTCTCTCAAAGAGGCTGCATGCCGTAGGGCTCGGTTTTCATTCATGCTGTGATGCTGCAACTCTAGTTTTTCAGACTGTGGAGCAAATTTAAACAGCAATGAGATCCATTCCATAGGCAAAACAGCAGTGGATTCTCCTTAGTGGGTCTAATCCCTGTGAGCACTAGGATGTAGTATTTTACACTGCCTGTTGTTGCTTCTGCAGCTGTACAACCCACTGGCGTTAGCAAAAAATCCAGAAGGCAAAACAAGCGTTTACTGATGCCCTGTGAAAATGCTGCCATTTCCAGCATAGCCAGCGGGGGGGAGTCATGAGTCAGACTGAGAACCCTGCTGAGAACCTGTCAAGGAGAGCTATTTTTGTGTCATTGAAAAGAGGAAATCTATTTTTAGAGCGTGGAGTTCCTACATCCTACACAGAGTGAACTGCAGTGAGTCAACGCATCAGCTCCCTAGTGCCAATCCATAGGCAGCTTATTGTGCTATAAATATACAACACCTACCAACCGAGTATATCACTGTAGAAGAGCGAAGAGTACAAGGTTGTTAAatcaatctatatataaataaattcccgtgcaaacacttttttttgtgcaaCCTTCATTTCAAGTCTTCAAATGAGGCTAGGACTGatacctcacacacacacacacacttcagtttAAGGTCATCACTTAAGGTGCATCAACACCGGTATGGTTAAAGATTTGTGGATGATGCACAAAACCATCAGCATGGCTGCCCATTTCCACTGATGGTCAtatttcttgttattccatTTTTCTCACAGTGACAGAAACATAACTCATCTGTTCTCCTTTAATTTCACACTGGGAGATGTGGCACCTTGTGAAATGGCGCGCCgtcaaataaaatgtgacagATTCAGTGGCTGAGTGCTTGTGTTTCTGATGTGCTGGGCCACGGAAACCAAACCCACAAACAAGCAAGACTTAATTTCCCAACCCAGCGGCTCTGGTAGTAAATGTGAAATACCTACATCTTCAAAATGACTGAGGACTACCAGGAGCCTGGATTACCATATCAGCGAATTACTTGACAACCTTTGTATTGAAAATGCCCCAGATATATGGGGGGGGGTTATAATCAACGTATTTGAAAAGTCATTTTCCTCAAGAATACAAACACCCCTATGTGAAACCTAGAAATTGGCCCAAACAGGCTCATTAACGATTGTCTAACTGTAATATGCTGTGCTTGCAGTTCACTTCCAATAGTAAGACAAAAGGAGCACAGAGCTGCAAACTGTAAAATGCACGGGGACTATATTTGTTAAGTTTTCATCATTATTTACGCAACACACAGAATGATGGATCAGCATTAGCACTGCAGTATTTTAGTCCATCACGCTTTGCCATCTGGGGATAAGCTGATTGGAGAGATTTTCATACTCCAGGAGGACAATGACCCCTAACATTCTCTGTTGTGTATTAGCTCCATGCACGATGAGTCTGCAGACATTATTAATTGCTGTAATTAAGGAACTTTTTCCATGCAAAGCAAAATAGTTTCCCTGTCTTAAGGTGTTCTATGGAATtcacacagtactgtacattcaCTGTGTGCACTAAGTTACCTGGGACTAATTAAGACATTCAAACGGAGAAACAGCTGTTCGGATTTGCAATTTCAGCCCCTTTTGGGGCTTCTGTAACTCGCAGAAAAAACGTCTGGGGTAAAAACTGAGTCATGTTTTCCAGGTCTTATTTGTTTCTCTGGCTCAAAAAGGAGGGAGTAATTTGTAGTAATaagaaaatcatatttacaCCAATCATTAATATTCCTCTGCTCTGTCCATTTTGGAGTCCCACAGAGGTCTTCCACAGAGGACACGGAGCAGAAATTCGAATATCCTCTCTGGAGGTAGACATGTAGGGTTTCCAACAGAATTCCATCCCCAGATTTATCCAGGGAATGATAGGTAGCTCCAGTAATTGTCCAACTGAATAAATGGGTATCCATGGAAGTCCATCAATATTAAAGAAACAGATGAATCAATTTTCCATTGGGAGGTTTGTGCTCTGCAGCGCTGCTACCTGGAGACGCAATGCAAACAGTCACCCACTCCACATCCCGTGATGCAACAATCCATGATTTCGGAAGCCTTGGGGGGCTGGTAGCTGTCAAGTGGCGGGTGTGTTTGACCTGGCCACAGGAGTGGGCAGCATGGTCAGGTAGTTGGAGGGCACGTAGCCCTGCTGCCCCCGGACCTTGACCAGGCTCCATTCGGGGTTCCCTTGTTTGTCACAGGGCTCGAGGACGTTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134131 True 4620 lncRNA 0.43 1 26838167 26842786

Neighbor

gene id symbol gene type direction distance location
AMCG00011489 NA coding downstream 19809 26804882 ~ 26818358 (-)
AMCG00011487 slit3,LOC106604933,LOC106611921 coding downstream 106487 26688414 ~ 26731680 (-)
AMCG00011486 LOC106604933 coding downstream 196201 26571172 ~ 26641966 (-)
AMCG00011484 LOC107598335,LOC107741069,LOC107664724,LOC107567475 coding downstream 347694 26446580 ~ 26490473 (-)
AMCG00011479 NA coding downstream 460788 26370173 ~ 26377379 (-)
AMCG00011492 pde6a,LOC107662021,LOC107756707,LOC107601194 coding upstream 88600 26931386 ~ 26943383 (-)
AMCG00011501 NA coding upstream 572402 27415188 ~ 27423491 (-)
AMCG00011503 NA coding upstream 654523 27497309 ~ 27529953 (-)
AMCG00011506 sp30l,sap30l,LOC106603970,LOC105890504 coding upstream 755328 27598114 ~ 27606988 (-)
AMCG00011507 galnt10,LOC103022003,LOC100711410,LOC102207837,LOC102305690 coding upstream 777723 27620509 ~ 27639480 (-)
G107232 NA non-coding downstream 4317 26833565 ~ 26833850 (-)
G107167 hnrnpa0,LOC105905838,LOC107664751,LOC107567479,LOC107598338,LOC107756703,LOC107741073 non-coding downstream 428792 26388212 ~ 26409375 (-)
G107166 NA non-coding downstream 508558 26311843 ~ 26329609 (-)
G107082 hspa9 non-coding downstream 640334 26196112 ~ 26197833 (-)
G107057 NA non-coding downstream 710402 26094805 ~ 26127765 (-)
G107237 NA non-coding upstream 67729 26910515 ~ 26910758 (-)
G107238 NA non-coding upstream 69222 26912008 ~ 26912220 (-)
G107241 NA non-coding upstream 72726 26915512 ~ 26915968 (-)
G107275 NA non-coding upstream 229701 27072487 ~ 27072708 (-)
G107289 NA non-coding upstream 404178 27246964 ~ 27247180 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 321660 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 818767 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 1819835 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 3003093 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 3020624 23813857 ~ 23817543 (-)
G107713 NA other upstream 2782298 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 3043430 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 3348787 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 5287708 32130494 ~ 32205554 (-)

Expression


Co-expression Network