G107290 (b4galt7,LOC106612238)


Basic Information

Item Value
gene id G107290
gene name b4galt7,LOC106612238
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27247739 ~ 27292313 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134192
ttaaaaggaaGCAAATaagagaaatgtttttatttagaagaGTCATATCACATAAGGAATTGTCATCACCAGAACCTTTTAAGGATTACAGAGAAAATGCGACACCAGGAATGTCACAATCCTCATCCCTAGGCATTCAATGAAAGGTTTTCAAAAACAACTGTTAAACCTAAACTGGACTGttataaagaaaactaaaaatgtggAGTTACTCAgcaataaattgtattaaaaaccaATGTGGTTGGcaacaaaaaactgaaagaaaaatatgtttgcagCAGTTTGAACCATTTGTTCTGTATGAAACAGAACTGTATGAAAATGGTGCTGATGAAACAGAAGCAAATATGTTATTATCTACACACATTGGAAATAATATCCAGCTAGGGGTTAGCTTACATACAAGAACATGCAGCtcatgaaatgtgaaatggcTCAGACTGTGGTGCAAAGTCTTAGTTCTGCCCATGAAAATTAGATGTTTTAATCCCCATCAATGCAAGCCTAGATATTGTATAACGCATGTAACATTGTAAacttacaataaaaataaaattaaaaaatgcagcgATGACGTTTGAAGCACACATGCATAAGACAGGTTTAAACAAATACCTAGCACACTTGTAAAAAGAAGAGAGGAACAGACACAGTCCATGTAAATGTTTGAACTTGCAGATCTCCCTGGAATTTGGATACTTGTTAAACTGCAAGgttaacaaaaaatgtcaagGTTTCTTGATTGAAATAAACGTATTCCTTACAACAGAAATTCAAAATATACTAGTCCATACTAAACGTTCAATATTATAGGCCAAGGGTTCCCAGCTACTGGTCTCTTCGGGTACTTATGAGATTTATCATAGCAGTTTCTTTAGTGCCTGAACTCATTGACAATTATATTGATATCAAGCAGCTGGTtgcaaagaaagaagaaaacaaactgcattgcAATACAGGTATCATGGTTAGGAAATCCTATCTTGGACTGATCTTAGtgatttttaatcaaaatgtaagtggaaaaagaaaagggcgaaagaatacaaataaacccCATAAACTTTACAGCAAATACATTCAAACGTTtcacaaactatttaaaactagCCTTCAAACAGTGCCATTTAGTCCCAGATTGTAAAAGAAAGCATAGAatagttttttctctttaaatctTCAGTACATAAAAGATCCCCTGGTCGGTCACAAATTATTTCCATTCAAAATCACACAATGAAGAATCTCCACTATCTGTACTAAAGATCTCTATTTTGCCAGTACGAATAAACCTTCCACTCTCATACTTCAGACCTAAACTGTGTCAAAAAGCAGCACTTAAACCATGCATTACACTGCAAATCAACATAAATTGGTGaaggggggcgggggcgggggggacaCAACAAAAAGTTACACAAGAAGAACATTACATGTAAACCCAGTATGCAATAGCAACCAGACATAGAATGCTTTAGTAAGGGTCATATCAGTGTTTGTTGATCCTGAATCTAATTTCTAGAAACTACTGCTTAACAGATTCATGAACATCAACATCCATCTCTCCCACTGCCCCACCCCATACAGAGCAGAGTAAGGAGAAATAACACTCCCACCGCCTCAGTACAACTGGATAATAGCTGGAGTCACCATCCCTTGGCTTTTCGAAGTATTTATGTGGTCcattcttttttcatttttccagatttttcAAAGATTAAAAAGGTAATCCACCTTGTGGAGGAGTACATAGATTTAACTGTTAGAATAAACTGTAAGGAAACAAATTGGACTCCCACTACTCGGGCCTTCCCCAATTTATGACCAACAGGCTCCTCCACTGCTGaagttgaaaaacaacaacctaaaTCCACGTGCTGATTTACTTAACAGAAGGGGGGTTTCAAATATCCAGCACCTAGAGTTGACTTAGACAAGATCCTGCAGCTCTTCTCAACAGAGTCTGATCAACCCTGGCCTCCTTAACATGGCAGTTTGATTCTCTGTGCTTGGTATAAGATATGGAATACAGCAATTGCAATAAATGGCAGAATGGCACTCTGAATGAAACTCTGGAAAGCAAACACTTGCAATCATTTTAGCTGCCGCACCTCCAAGATTGTCAAACGAGTCGCATATGGATGACGAAGTCCTCAGAatggcatttaaaaacactgacgTCAGCTATCTCAGACAGCTCCCGGCCACACTGGCATCATCCACAAGAACGGTTTGGGGAGCCGTCTCTTATTTCAAGGGGTAACACATAGGAGCAGATTTCTTGCTGAAGCTCCAATAGTAGCAACATACCTTCAAACACATGCTTTTATTCATCATGAATAGGGCATCGTGATGTACAGTTGTTCTCTTATGTACGGTTGGCTATTCAAACTTTATATACCAATACATCTttatgagaaaaaagaaaaacaaccttcCCAAAAGTAAACTAGTTGCAACTAACAGTACTGAATTCCATTTCTGCAAACACGTGATTCTGTCTGCCTTTTACAGCACTGTGACAGTGACTTCAGGACACATTGTAATAGTTATAGATACAAAAATCAAAAGTGTTTGTCaacaattctttatttttacttgagAGGAACAAAACCAATTAATGTTTGCCCACATAAGGGCTGAGGAATTAAGCTTTACTCTCACTTATTTGGGTTCAGTATAATTTCTGGTTGAATTACAGTACTGCAGTGCAATATACCTTGCTTcaattttatacatatatatacatacacatacatatacatatatatatatatatatatatatata
>TU134193
TCATCGTCTTCTCTCCCCCAGCCCCAAAACCGGTTGGACATGCCATTGCACTGGAAAAGACAGACAACCATCATTCAGTAAGAACACCAAAAGGGAACGAATACATGAACATAGGTGTCCACCTCCCCTGTTCTTCAGTAACATTCTGGCACTCTCCATATGAAAgggacacaaaacaaattaaagtgtaTATTAAGGTGGTCAAGTCTCGTACAGTACAGTTTTGAACTGCATGTATACATGTTTTACCATCTGGTAATGCTGCTTTGTCAACAGCAGAATTCCTCCCACGTAGGTCTTGTAGTGATAGATGGGGTGCAGCTCTGGGGAAGCAATGTGGAAGGGACCCGATTCAGGAAAGCCATAATCTAAAGCGATGTTTTGAGGCAGGAGGTCCACATCGTGCATGGCGATGTAATCGGTATCATTCCCGCTCTCTGTGAAGCCGACGTTGATCAGAGACGCTCTGTTGAACCTGGGGGAAAGAACCAGTATGACATTGACCATCATTCTTCATAAAAACTTAGCTATGCTCCAGTTATCGTTCTATAGGGAGATCGCAAGTAAAACTATGtaaaagagaggggggggggNNGAAGCTCAAAcaaggtatttaaaaaataaaataatctggcAGTTCATACTGACAACTTCCAGTGTAGAACATTAATAAGAGATTTCAAAGTATTTAAGCCCAGAATAGAACAAAAGATATATATACCACTGAAAAtgggaaaggggaaaaaagtcaTGAGAACTCAAAGGGGGGGAATCTCATAGTAAAAGAAACTGAACAGTTTAAAGGTTCTCACCACGCCATGCTTCATGTTCTTTGGGAAAACAAGGAACACTATGCTGCCCTTTTGTGTGTTGTACTGCATGACCTGCAAACGCATAAACAGGAAAGAAGAATGCAATCTAGACGAGTTTCTTGGCCTCGAAGAAGCTCTTTAGGTGTTTCATCTGCCAGAAGCCAATGGCCACCAGGATCAGGGTCTGGACGATGGACCACCACAGGACTCTCTGGTTGGTGCTCTCACTGGTCTGTCGAAAACGCTCCTCACGACCTCTGGTAGTTCTGCTCTTTTTGGATCTGGTCAACCTGCTCGATGAGCTGTCGAACCCTCAGCTGCAGCTCGGTCAGCTTGTCCTTGGCTGCAATCTCGGCGTAGTTAGTGGCATGTTCACCAACTTGGATATCCAGGTGAACCCTCTGGAGAAGTAAAAAAGAATCAGCATCCAAGTAGTaaccaattattttttcaattccaTTTACAAAAAGAGACTATGTGGTTGAGTGATTAAGGGAAAGGCCTAATTATAGTGAGGATCCTACTTCTGCCTCCCTGTGCATTAAGCTTAGCAAgagactgtttttgttt

Function

symbol description
b4galt7 Predicted to enable xylosylprotein 4-beta-galactosyltransferase activity. Predicted to be involved in glycosylation and proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 1. Orthologous to human B4GALT7 (beta-1,4-galactosyltransferase 7).

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 42-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134192 True 2793 lncRNA 0.37 2 27247739 27286457
TU134193 False 1382 lncRNA 0.44 3 27281954 27292313

Neighbor

gene id symbol gene type direction distance location
AMCG00011492 pde6a,LOC107662021,LOC107756707,LOC107601194 coding downstream 304356 26931386 ~ 26943383 (-)
AMCG00011489 NA coding downstream 429381 26804882 ~ 26818358 (-)
AMCG00011487 slit3,LOC106604933,LOC106611921 coding downstream 516059 26688414 ~ 26731680 (-)
AMCG00011486 LOC106604933 coding downstream 605773 26571172 ~ 26641966 (-)
AMCG00011484 LOC107598335,LOC107741069,LOC107664724,LOC107567475 coding downstream 757266 26446580 ~ 26490473 (-)
AMCG00011501 NA coding upstream 122875 27415188 ~ 27423491 (-)
AMCG00011503 NA coding upstream 204996 27497309 ~ 27529953 (-)
AMCG00011506 sp30l,sap30l,LOC106603970,LOC105890504 coding upstream 305801 27598114 ~ 27606988 (-)
AMCG00011507 galnt10,LOC103022003,LOC100711410,LOC102207837,LOC102305690 coding upstream 328196 27620509 ~ 27639480 (-)
AMCG00011508 galnt10,LOC106603494 coding upstream 377482 27669795 ~ 27679146 (-)
G107289 NA non-coding downstream 559 27246964 ~ 27247180 (-)
G107275 NA non-coding downstream 175031 27072487 ~ 27072708 (-)
G107241 NA non-coding downstream 331771 26915512 ~ 26915968 (-)
G107238 NA non-coding downstream 335519 26912008 ~ 26912220 (-)
G107237 NA non-coding downstream 336981 26910515 ~ 26910758 (-)
G107308 NA non-coding upstream 116205 27408518 ~ 27408737 (-)
G107348 NA non-coding upstream 254894 27547207 ~ 27549867 (-)
G107383 NA non-coding upstream 321622 27613935 ~ 27615738 (-)
G107406 NA non-coding upstream 498582 27790895 ~ 27845007 (-)
G107409 NA non-coding upstream 590735 27883048 ~ 27883580 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 731232 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 1228339 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 2229407 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 3412665 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 3430196 23813857 ~ 23817543 (-)
G107713 NA other upstream 2332771 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 2593903 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 2899260 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 4838181 32130494 ~ 32205554 (-)

Expression


Co-expression Network