G107296


Basic Information

Item Value
gene id G107296
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27276983 ~ 27279308 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134199
tggaaatttaaattactttaattatgcCCAGAACCATCCAATCTCCATTTCCCATTACATCAACAGCAGATTACTACACTGGGTTCAAAGGAACAACTCAACAAGAAAGGCCTCAAAAGACAATTTCTTAGATATGAAGAAATTCTTTTGATAAAGTGTTATTCTAAGATTTTCACGATAGACATGACATTACATAAACAATCTTTAAAACCCAGCCCCTTTAAAGCCACCATAGTCTTGAGAATACCATCAGTGTTAGGCAATATTTGCagcaatgtgttttaaaatgtatgtaaatcatACGAATGGAAGCTCTTGATTGAATCAATACATAAGGGACACAAATCCTTTCACAATCAACCACATACTTTCTGGATACTGTTCTGTACTACAAAATGTGCTCCATCAACAACTAAAAGATATGTAATTGCAATTAGTAGGTATAGATTTCCAGTAGTAAATAACCATAATTTAATATTCTGCGGTGAAGGGATGGACGACTTCCTTTGATTTTGACCTACAGTTTCAGGTATACCACCACTGTCAGAAAAAATCACAACTTAAAAATCTTCAAAAAGGGACACAAATAATTTAGTAAACGTTCTTGgacaggataaaaacaaaaaacttccaTAACCTTAAAACCAAATTACCAATTGCAGTAAAACCACACAGAGCATGATTCATTATTAGGAATAAGATTCACACTTGTAAAGTTaaatttttaaatctatttaactgtaataaactaacaaaaacaaaacaaaaaaacagtaaaccCACTTAAAAATACTGATAACAGAAAAGTGGACAATGCATCTTGCAAACCCAAATAAATAGATTGTTTCTATAATCATTTATCAATCATTTACCAAACTTacagatttaaatgtgtgttagaTTTCAATCAATATCACACAAAAGTAAATTCCAActcaaatttcaaattaattaaatgtgcagGATTTTGTTTCAGTCTGAGGTTATTGGAAAGTCTGGTTTAACTCTTGAGATTGCTAGTGCAATATTGCCAAACAAAACTCTggcaattgaaattgaaaagtaAATAGAAAACATGCATACCACATTCCTCCccaagaggaaaaaacaaacatatactaGATCTGATAAGGGtttcaaaaggaaacaaatattgaaaactGCTTTAAAAGTTTCCagcgttttgttttttctaaacatcaagaaaggaaaatacatgACATTTAACACACATCCTGGATATCAATGTATGATTATTTAGAGGCAGGAAGTAGTACATTATCACATTTTACCAGgtttttctttttcaaaacatcagtttaaaggtttaaaattcccccttccccccaattaattaaaacagaacctgcattaaaaaataaaaccagcatTAGTCTTCACATTAGTAGTTCTCAACTGCAATTCCTGGTGAATGCAGACAGACCCAGTTTCGATTGTAATCAGATCAGTTATCATTTTATgtcaaagtttattttatgtacaaaATTCTGTACAGGTTGTATACAGTTATTTTCGAAGTCAtgttaatgtgtaaatatataatttttttttgcatttccaaaGTCCGTCACCTCCCAGTTCAAACAGGTTCTGCAGTTGAGAAACACTGCACAAATGTAAACAAGATGGATCATGGACAGTgcatggataaaaataaaaaaaagggaaaaaaaaaaacctgatgaAATTAACGGATTATTCATCTATGCAAGACAAACTGAAGGCAAAGATTCAGAAAGATCTTTGATTTAGTTTCTTAAGTAAATCTCAgctttattcatgtttttcaaaaatacatcttccttgaaaaagaaaaaaaaagactttttaATCTGCttctcactttttttcttttttagatgtCACAAAGCTGTCTGGCTCTAAAACACAGCGAGTTCTACCTCATATCAAATATACGCAAAATCCCATAAGTtaatctctcgctctctccttcCAGCACTTTTACAGATATAAACACTGCGATTTACAGCGAATTTAATAAAATTCACATTAATTTCTTGAAGCGTCGCCGGTTCTGTCCATCAGTAAAATCGCTTGTTTCTTTCTTGACGTTTCTGGAACACAACAGCGCCCACTACTGCACAGACCACGATGCCCAGCAGAGCgcagagcagcagcagaaacacTTTCCAGCCAGTCAGAGGGGTGCTCCGGAAATTGCCCGTTGGATCGTCGATGTTGTCTGCATTAAAAGACACCAACCAGTCACTATTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134199 True 2258 lncRNA 0.33 2 27276983 27279308

Neighbor

gene id symbol gene type direction distance location
AMCG00011492 pde6a,LOC107662021,LOC107756707,LOC107601194 coding downstream 333600 26931386 ~ 26943383 (-)
AMCG00011489 NA coding downstream 458625 26804882 ~ 26818358 (-)
AMCG00011487 slit3,LOC106604933,LOC106611921 coding downstream 545303 26688414 ~ 26731680 (-)
AMCG00011486 LOC106604933 coding downstream 635017 26571172 ~ 26641966 (-)
AMCG00011484 LOC107598335,LOC107741069,LOC107664724,LOC107567475 coding downstream 786510 26446580 ~ 26490473 (-)
AMCG00011501 NA coding upstream 135880 27415188 ~ 27423491 (-)
AMCG00011503 NA coding upstream 218001 27497309 ~ 27529953 (-)
AMCG00011506 sp30l,sap30l,LOC106603970,LOC105890504 coding upstream 318806 27598114 ~ 27606988 (-)
AMCG00011507 galnt10,LOC103022003,LOC100711410,LOC102207837,LOC102305690 coding upstream 341201 27620509 ~ 27639480 (-)
AMCG00011508 galnt10,LOC106603494 coding upstream 390487 27669795 ~ 27679146 (-)
G107289 NA non-coding downstream 29803 27246964 ~ 27247180 (-)
G107275 NA non-coding downstream 204275 27072487 ~ 27072708 (-)
G107241 NA non-coding downstream 361015 26915512 ~ 26915968 (-)
G107238 NA non-coding downstream 364763 26912008 ~ 26912220 (-)
G107237 NA non-coding downstream 366225 26910515 ~ 26910758 (-)
G107308 NA non-coding upstream 129210 27408518 ~ 27408737 (-)
G107348 NA non-coding upstream 267899 27547207 ~ 27549867 (-)
G107383 NA non-coding upstream 334627 27613935 ~ 27615738 (-)
G107406 NA non-coding upstream 511587 27790895 ~ 27845007 (-)
G107409 NA non-coding upstream 603740 27883048 ~ 27883580 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 760476 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 1257583 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 2258651 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 3441909 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 3459440 23813857 ~ 23817543 (-)
G107713 NA other upstream 2345776 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 2606908 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 2912265 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 4851186 32130494 ~ 32205554 (-)

Expression


Co-expression Network