G107411


Basic Information

Item Value
gene id G107411
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27887467 ~ 27887769 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134332
tcaccgttctcatgatcattgaaacaccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggtgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatcctaggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgaga

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134332 True 303 lncRNA 0.47 1 27887467 27887769

Neighbor

gene id symbol gene type direction distance location
AMCG00011509 NA coding downstream 174510 27712140 ~ 27712957 (-)
AMCG00011508 galnt10,LOC106603494 coding downstream 208321 27669795 ~ 27679146 (-)
AMCG00011507 galnt10,LOC103022003,LOC100711410,LOC102207837,LOC102305690 coding downstream 247987 27620509 ~ 27639480 (-)
AMCG00011506 sp30l,sap30l,LOC106603970,LOC105890504 coding downstream 280479 27598114 ~ 27606988 (-)
AMCG00011503 NA coding downstream 357514 27497309 ~ 27529953 (-)
AMCG00011514 LOC105893206 coding upstream 3988 27891757 ~ 27895311 (-)
AMCG00011515 NA coding upstream 29164 27916933 ~ 27953143 (-)
AMCG00011517 NA coding upstream 136461 28024230 ~ 28025901 (-)
AMCG00011520 rars,LOC106568002 coding upstream 910461 28798230 ~ 28816286 (-)
AMCG00011521 wwc1 coding upstream 935889 28823658 ~ 28851487 (-)
G107409 NA non-coding downstream 3887 27883048 ~ 27883580 (-)
G107406 NA non-coding downstream 42460 27790895 ~ 27845007 (-)
G107383 NA non-coding downstream 271729 27613935 ~ 27615738 (-)
G107348 NA non-coding downstream 337600 27547207 ~ 27549867 (-)
G107308 NA non-coding downstream 478730 27408518 ~ 27408737 (-)
G107471 NA non-coding upstream 675298 28563067 ~ 28563577 (-)
G107503 NA non-coding upstream 778393 28666162 ~ 28666386 (-)
G107597 NA non-coding upstream 1045068 28932837 ~ 28933182 (-)
G107602 NA non-coding upstream 1046528 28934297 ~ 28967451 (-)
G107638 NA non-coding upstream 1314796 29202565 ~ 29203192 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 1370960 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 1868067 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 2869135 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 4052393 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 4069924 23813857 ~ 23817543 (-)
G107713 NA other upstream 1737315 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 1998447 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 2303804 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 4242725 32130494 ~ 32205554 (-)

Expression


Co-expression Network