G107661


Basic Information

Item Value
gene id G107661
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 29321964 ~ 29323626 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134632
TCTCCACTGTTTTTAAAGTGCAAAGTTGGGCAACTGCAATACCAGACtctacttcatttatttttgtacttgaGATGGCAAAGGATGTATAGCTTAGATGTTTGTGATTTCTACAGATGTTTACTCTTGCTCTACTATAACTTGGAAAGGCTGGCAGTTGTATATGTttcctgaatatatatatttttaaatagggaGGTTCTTTACATTCAGGGCTAGATTTGACCATGcccacaaacacactgacacacacctgtgAGTAGAGTGGCACAGTTGGTTTGTGCTTGGTCTAGGGTCTGCCTGTCCCACATACTTGCTAACCAGTCTGGACAGTGTGAGTCATACTACATCATTCAATGCTGGAGAGATCTTAATCtacaaagggggggggggggactggcGATGatgatattgatttatatacagATTGCACGTCTCtgctctctgcctgtctgtatTCACCTCTTCAGAGTCATCGAGTGTTATTCGTGACTGCTTTAGATCTATGGATAGTCATTCTAGGGAGTACTTTGGCCTTTTTGGCTGTACAATTGATGATTGCCATGGCCAATTGCtcatttttaacaatttttaactgtttttcagtttacaCTTAACCACTACTGTCCTCAGTCCAATGCATTTGCATCCTCTGTGTTTGAAATAGCTGCAGTGTTGCCCAGCTACATGAATACTTGAAGTACAATCTGCAGTTTAATGTTGGTAGCTGTGAGGGTGGGCTCGTACTTGTTTCAAATGGTCATGACTACCAGGTGCtccttttaaagtgtttttatttttattttttattgcctTATACATAAAACTATCAATGCGTGTATGTTTCATTAatcttttattgatttttttttttttttttttttttacgatgtGTATACTCtgaattttctgaaatgtaatgtgtattttgtacaCCTTTCATATATGCAAAGGATGACTATATGTATTGTGCTGCAGTTATGAGAgaaggtttattattattaataataatataaactgtCTTATCAGCTATTACTCTGCTGTGGCCAATAAGTGGTGTTCCAGCTGCTAGAATAGAAGTGTGTTCCTTATATTCAGTGACCATAACATCTGTACAGTTGTCAGGAAAAGTTTGGCTTGTCTGGTGGTATGAATTTCATCATGCAATCTCCACCAAAAACTGCAAGGAACAATACAAAATCCGTATCTTGTATCAGATATTCATTATAGATGAATGTCAACTGTAGAATCTATGGAGATACTGCTTTATTGTTTAACTTGTCTTTAtactggtattttatttatttttgacagtaacttcaaaagttttttttgttgttgttttactttctttccaTTCCATGACTTGAACACCTCCTTCCTCTGATAATTTGGGTTTCTCGGtttcattaaactgtttttttaaacctgtgtATAAAACCCTACACTGTGTTGGACTCCCTGTCTGAAAGACACTATCTCATATATGGACTACATGGGATTGGCATCTTGCGCTAGTGTCCAATATAACCAATGCCTTTGCTAATGTATTGGGTAACTCAGAGATACCCATTTAATTTCAACTTTGTtaaaactacactacacttttAACCTATTTGAAgatcaacatgtttttttattttttaaaaactgtattaacact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134632 True 1663 lncRNA 0.36 1 29321964 29323626

Neighbor

gene id symbol gene type direction distance location
AMCG00011527 NA coding upstream 107 29279389 ~ 29321857 (+)
AMCG00011526 LOC106568009 coding upstream 47469 29222351 ~ 29274495 (+)
AMCG00011525 fgfr4,LOC106568015 coding upstream 182435 29118842 ~ 29139529 (+)
AMCG00011523 rab24 coding upstream 354226 28951310 ~ 28967738 (+)
AMCG00011518 NA coding upstream 532575 28777033 ~ 28789389 (+)
AMCG00011529 dbn1,LOC107732329,LOC107692779,LOC107561701 coding downstream 48253 29371879 ~ 29417263 (+)
AMCG00011530 NA coding downstream 94297 29417923 ~ 29436718 (+)
AMCG00011533 NA coding downstream 320542 29644168 ~ 29651012 (+)
AMCG00011538 LOC108439763,LOC104968126,LOC108278891 coding downstream 679574 30003200 ~ 30057500 (+)
AMCG00011542 LOC105026271 coding downstream 858776 30182402 ~ 30194886 (+)
G107618 NA non-coding upstream 160222 29081231 ~ 29161742 (+)
G107530 NA non-coding upstream 458207 28795887 ~ 28863757 (+)
G107513 NA non-coding upstream 607475 28714123 ~ 28714489 (+)
G107502 NA non-coding upstream 655578 28666166 ~ 28666386 (+)
G107450 NA non-coding upstream 1033573 28288150 ~ 28288391 (+)
G107672 NA non-coding downstream 161246 29484872 ~ 29490870 (+)
G107709 NA non-coding downstream 274375 29598001 ~ 29598243 (+)
G107712 NA non-coding downstream 301464 29625090 ~ 29625387 (+)
G107714 NA non-coding downstream 302115 29625741 ~ 29626058 (+)
G107729 NA non-coding downstream 352966 29676592 ~ 29676880 (+)
AMCG00011519 NA other upstream 445609 28869142 ~ 28876355 (+)
G107394 NA other upstream 1594097 27712206 ~ 27727867 (+)
AMCG00011488 NA other upstream 2479172 26818052 ~ 26842792 (+)
G107202 NA other upstream 2550750 26770438 ~ 26771214 (+)
AMCG00011476 NA other upstream 2961189 26356167 ~ 26360775 (+)
G107741 NA other downstream 373975 29697601 ~ 29699419 (+)
G107784 NA other downstream 534344 29857970 ~ 29875476 (+)
G107858 NA other downstream 848162 30171788 ~ 30212090 (+)
AMCG00011551 NA other downstream 1660353 30983979 ~ 31173789 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 2779247 32102873 ~ 32204915 (+)

Expression


Co-expression Network