G107728


Basic Information

Item Value
gene id G107728
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 29671571 ~ 29673113 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134718
cacttgttaatatatacatttttaatgcaaccAGTTCTGGACATCTATTATATTATGGTTATACCTGTTCACTTAAACAGTTTAAAGCattctaaaatataatttaagtttttctgCAAATGAGAACAACTACAGCTAAAGCACCTTGCATACAACTaaaagggaaagagaaacaACATGTATGACTTTGGCAGTCCTTGAtcagagcagtggttcccaaacacCAGTCTGCAAACAGTTTCTGGCCTATCTGCAGCATATTTTGTCCTGTACCCTATCACATTCTTCtaaaaaattgattttatttatttttcataactacagaacaaataaacatttatgttttttggcaaTTGCACTGTTTCCCTTTATACAAGCGCATGTGCAATAACATTATGTTGTGGTTAATTTTGTGGGgtcacaatattttatttaaaaaatccctGGTCGCAATGTGAGGAATTTGGGAAACACTGGTTCAGAGCACTGGAATTACTTTCAGACATTCAGAGATTTAAATATCCTTCAATTACACtgatataaaacacacatttaaaatattttccttctttctttaaaCCAGACTGCAGGATGCAAGACAActtttaggattattattattattttttttaagagattCATCAAGTTCCATCATTACCCTCCTCtcgcaaaaaatatatacctggATTAATTAACAACAGAGGAAATTCTAAATGAAAATAGGataaatatacatgtgtttatGTAATTATTGTCTGTTAATCTGCAATCAGATATAAAAGTTTcaatattgttgtttgtttctaaatctgtattttacTCAATATACTCAGAGTCAGGTTCCACAtttgaagtggaaaaaaatattgccCTTGTTTCTCATTTGGTCTTATCTTCAAACACTCAGTTGTACAAtctgttctgtattttcagATTTACATTCAGCACCCACATTTTCCAGTTACtgccctttaaaaacaaagaagccatcagatgcatttcaaaatgcaaaatgcaattttatatgtttaaatatagtaCTGCGTAGTACCCATATTTCTGGTGCAATTATGTCAGTCTTAAAGGATAACTATTGCTAtacaataaaaccaataaaaagtTTGGTTTATCAtgtctcatttttattttattttttaaattccatcaTAACTCACCAAAACCATGGCAGCAGTCTAAAGCTTACTTGCATTCTGTTTCGGGTCTTAGGGTGTGACTTCTATCCAGAAACAGAGAGTAGGTAATACAGGACTGGTATTTCCCAGAGCAATAAGGATAATCATTACTTTCAGTACTGTGTTAGTGTTAACATTTTACCCATTGATGAagatatgattattataattttttagcTGTGAAATAGTGaggtctcactctctctcttcaaaCTGTACAATTTCCAAAATTCAGCACggtgtaatacatttaaataaatctagtAATAAGGTCTCAAAATGGAATctaactttaaaatgttttattacataaattGTTTAACATAATCCAAGACTGACATGAAtgctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134718 True 1543 lncRNA 0.31 1 29671571 29673113

Neighbor

gene id symbol gene type direction distance location
AMCG00011532 grk6,LOC107561710 coding downstream 157563 29491908 ~ 29514008 (-)
AMCG00011531 NA coding downstream 210361 29444603 ~ 29461210 (-)
AMCG00011528 NA coding downstream 449366 29209340 ~ 29222205 (-)
AMCG00011524 NA coding downstream 628014 28972225 ~ 29043557 (-)
AMCG00011522 NA coding downstream 791418 28874133 ~ 28880153 (-)
AMCG00011534 NA coding upstream 13072 29686185 ~ 29739369 (-)
AMCG00011535 eif4ebp3l,eif4ebp3,LOC107587081,LOC107576657 coding upstream 294362 29967475 ~ 29982671 (-)
AMCG00011537 NA coding upstream 313946 29987059 ~ 30031892 (-)
AMCG00011541 LOC103365697 coding upstream 381719 30054832 ~ 30058232 (-)
AMCG00011540 LOC103365697,LOC102790792,LOC102213970 coding upstream 399505 30072618 ~ 30081138 (-)
G107711 NA non-coding downstream 53833 29617521 ~ 29617738 (-)
G107705 NA non-coding downstream 114259 29556808 ~ 29557312 (-)
G107695 NA non-coding downstream 183091 29402035 ~ 29488480 (-)
G107691 NA non-coding downstream 232910 29354415 ~ 29438661 (-)
G107669 NA non-coding downstream 347918 29322885 ~ 29323653 (-)
G107732 NA non-coding upstream 7697 29680810 ~ 29681026 (-)
G107765 NA non-coding upstream 113921 29787034 ~ 29787355 (-)
G107770 NA non-coding upstream 123542 29796655 ~ 29800616 (-)
G107786 NA non-coding upstream 158808 29831921 ~ 29875263 (-)
G107810 NA non-coding upstream 269125 29942238 ~ 29942490 (-)
G107713 NA other downstream 46184 29625084 ~ 29625387 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 3155064 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 3652171 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 4653239 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 5836497 23829297 ~ 23835074 (-)
AMCG00011536 NA other upstream 213103 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 518460 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 2457381 32130494 ~ 32205554 (-)

Expression


Co-expression Network