G107781


Basic Information

Item Value
gene id G107781
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 29831459 ~ 29832882 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134784
CCAGGATCTGAGTTTGCCCTAGACACAGCCTCAAAGATGTCACTGTGGTATTGAAAAACTGATAAACTCACTTTGCAAATACATCCCGAGACaagcaattcaaattcaagatTTCAGTGCATATTCTAgctgtagtgggaaaatttacctgtattatttttttaatactttatattattaatggtttcatgttgctaATTCAGTTTTCTCtataaagcaattaattaatttgtaattaccCCTGTCTGGGAGGTATGTTAAGTATTAGTTAAAGCATTGTGGTCTGTAGTTTCATACCAAACTCGGGATGCTGCAAAGTCAAATCTACCAAAGTCATGTTACCCTGCCTCTGCCAACCATTGTCTTTAAGATACTTAACCAACTACTGTCCAAGAGGGTACTTTAATCAACCATTGTCTTTTGGATACATAGTCATGACATGTCTGAACTTGTACAACTGGATTGAACTTGAGATCACTTCCAGCAGATAAGACTGTAACCTATTGTctatcaaaacataaaaaaggctTCTTCCAACTCACATCtctttcttcacttcatgtgagagggtatcctgggatttactaaaaccactacacaGCCATCCTGTACACATTCTTTACTCTAACCAACATGCAAAACTCACACTCAGAGATGGAGAAAAGGAGTTAACTACAAGAAAAAAATCTCCAAACATTTTGAaggaataatttaataatttaatttaattctgcaaTTCTGATTTTGGGCACAGGCAACTAACATTCTTTTTATGGgtttaccttttttttctttttgacttTTTACAGTCTTGTATTCTAGgaatgtaaatatgaaaaagGATAGTTactgtttcaaatatttattaataaggGCTAtcagaaagaaatatataaatatatatagctaatgtctctattaaacaaaaaataaaaccgagAAACTGatcacaaaacattaaaacaaatctaaagaataatttaaagacatacttttgtgaaataaaactaaaaattaacCACTACTACCACAAAAGGGAGACAATCAAAATTACACGGCACAGAGGGAGTGCAGGTTACATTCATCACAgtaaaaatattgttattagtagTCCTTTAAAGCTGCAGGAAGTAGTAAAGAGTGGGGAGTGTGTGGAGGGGCAGAAGGGGACGGGTGTATAGCACCACCAGTCTGAAGTCCCTGAAGTGTGGACATCATCCTTGCTGTGGTGGATGGAATTAGGTGAGCATGTCCCACAGGCAGCAACAGCACAGCGCAGTCCAGCAGGCCGTCAGACAGGCGCCCTCACTTGAATCATTGTTTCTGCGCTCTTCCACCACGtacactgagagacagaaagagcCATCACACATCTGACACAGGCACACAAAAG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU134784 True 1393 lncRNA 0.37 2 29831459 29832882

Neighbor

gene id symbol gene type direction distance location
AMCG00011533 NA coding upstream 180447 29644168 ~ 29651012 (+)
AMCG00011530 NA coding upstream 394741 29417923 ~ 29436718 (+)
AMCG00011529 dbn1,LOC107732329,LOC107692779,LOC107561701 coding upstream 414196 29371879 ~ 29417263 (+)
AMCG00011527 NA coding upstream 509602 29279389 ~ 29321857 (+)
AMCG00011526 LOC106568009 coding upstream 556964 29222351 ~ 29274495 (+)
AMCG00011538 LOC108439763,LOC104968126,LOC108278891 coding downstream 170318 30003200 ~ 30057500 (+)
AMCG00011542 LOC105026271 coding downstream 349520 30182402 ~ 30194886 (+)
AMCG00011545 NA coding downstream 404433 30237315 ~ 30243219 (+)
AMCG00011548 NA coding downstream 426656 30259538 ~ 30261357 (+)
AMCG00011547 NA coding downstream 600092 30432974 ~ 30444408 (+)
G107774 NA non-coding upstream 24102 29807090 ~ 29807357 (+)
G107767 LOC100846954 non-coding upstream 36246 29794545 ~ 29795213 (+)
G107766 NA non-coding upstream 39835 29791403 ~ 29791624 (+)
G107742 NA non-coding upstream 125555 29701812 ~ 29705904 (+)
G107729 NA non-coding upstream 154579 29676592 ~ 29676880 (+)
G107817 NA non-coding downstream 153713 29986595 ~ 29994269 (+)
G107857 NA non-coding downstream 337119 30170001 ~ 30170380 (+)
G107909 NA non-coding downstream 572528 30405410 ~ 30448646 (+)
G107932 LOC101154678 non-coding downstream 641431 30474313 ~ 30493033 (+)
G107937 NA non-coding downstream 660475 30493357 ~ 30493741 (+)
G107741 NA other upstream 132040 29697601 ~ 29699419 (+)
AMCG00011519 NA other upstream 955104 28869142 ~ 28876355 (+)
G107394 NA other upstream 2103592 27712206 ~ 27727867 (+)
AMCG00011488 NA other upstream 2988667 26818052 ~ 26842792 (+)
G107202 NA other upstream 3060245 26770438 ~ 26771214 (+)
G107784 NA other downstream 25088 29857970 ~ 29875476 (+)
G107858 NA other downstream 338906 30171788 ~ 30212090 (+)
AMCG00011551 NA other downstream 1151097 30983979 ~ 31173789 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 2269991 32102873 ~ 32204915 (+)

Expression


Co-expression Network