G107886


Basic Information

Item Value
gene id G107886
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 30168019 ~ 30168246 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134902
GGGGACTCTATGTGTGTGCCCTACAGGGATGAGACAGGCATCTATTGACACAGTTCTGCCCCCTGGAGATAATGTCCAAagaatacaaagtgcaagaatacagttaagtacaaggcatcaaacattacaaattctaatttacattaaacggagcaattcaaaatataatacattttacaacttccaatgtacacaggtaagtacagtaagtgaggtcatacatcctgg

Function

GO:

id name namespace
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134902 True 228 lncRNA 0.39 1 30168019 30168246

Neighbor

gene id symbol gene type direction distance location
AMCG00011540 LOC103365697,LOC102790792,LOC102213970 coding downstream 86881 30072618 ~ 30081138 (-)
AMCG00011541 LOC103365697 coding downstream 109787 30054832 ~ 30058232 (-)
AMCG00011537 NA coding downstream 136127 29987059 ~ 30031892 (-)
AMCG00011535 eif4ebp3l,eif4ebp3,LOC107587081,LOC107576657 coding downstream 185348 29967475 ~ 29982671 (-)
AMCG00011534 NA coding downstream 428650 29686185 ~ 29739369 (-)
AMCG00011539 LOC105907442,LOC105011305,LOC106603918,LOC108439787,LOC107700028,LOC107756157 coding upstream 5445 30173691 ~ 30181506 (-)
AMCG00011544 NA coding upstream 87465 30255711 ~ 30256184 (-)
AMCG00011546 NA coding upstream 289180 30457426 ~ 30461952 (-)
AMCG00011549 pura,LOC106563647,LOC105894349,LOC106603021,LOC107684715,LOC107693725 coding upstream 365642 30533888 ~ 30534748 (-)
AMCG00011554 LOC108442605,LOC107660786 coding upstream 1161493 31329739 ~ 31343995 (-)
G107810 NA non-coding downstream 225529 29942238 ~ 29942490 (-)
G107786 NA non-coding downstream 292756 29831921 ~ 29875263 (-)
G107770 NA non-coding downstream 367403 29796655 ~ 29800616 (-)
G107765 NA non-coding downstream 380664 29787034 ~ 29787355 (-)
G107732 NA non-coding downstream 486993 29680810 ~ 29681026 (-)
G107899 NA non-coding upstream 125016 30293262 ~ 30357585 (-)
G107910 NA non-coding upstream 237203 30405449 ~ 30448589 (-)
G107949 NA non-coding upstream 386441 30554687 ~ 30554895 (-)
G107965 NA non-coding upstream 535184 30703430 ~ 30703632 (-)
G107975 NA non-coding upstream 895923 31064169 ~ 31073667 (-)
AMCG00011536 NA other downstream 247999 29886216 ~ 29920020 (-)
G107713 NA other downstream 542632 29625084 ~ 29625387 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 3651512 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 4148619 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 5149687 25012205 ~ 25018332 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 23327 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 1962248 32130494 ~ 32205554 (-)

Expression


Co-expression Network