G107932 (LOC101154678)


Basic Information

Item Value
gene id G107932
gene name LOC101154678
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 30474313 ~ 30493033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134954
catcggtgcacagccattttcagatctcttcagagatgttcaatcgggttcaagtctgggctctggctgggctattcaaggacattcacagagttgttctgtagccactcctttgttatcttggctgtgtgcttagggtcgatgtcctgttggaagatgaaccttcgcccccgtctgaggtccagagcgctctggagcaggttttcatcaaggatgtctctgtacattgctgcattaatctttcccttgatcctgactagtctcccagttcctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtagggatggtattggccaggtgatgagcggtgcctggtttcctccagacatgacgcttgccattaaGGCCAAAaaattcaatctgtgtttctcatggtctgagagtccttcaggtgccttttggcaaactccaggtgggctgtcatgtgccttttactgaggagtggcttccatctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacacgctagagctctgtcagagtgaccatcgggttcttggtcacctccctgactaaggtccttctcccccgatcgctcagtttggc

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134954 True 669 lncRNA 0.52 2 30474313 30493033

Neighbor

gene id symbol gene type direction distance location
AMCG00011547 NA coding upstream 29905 30432974 ~ 30444408 (+)
AMCG00011548 NA coding upstream 212956 30259538 ~ 30261357 (+)
AMCG00011545 NA coding upstream 231094 30237315 ~ 30243219 (+)
AMCG00011542 LOC105026271 coding upstream 279427 30182402 ~ 30194886 (+)
AMCG00011538 LOC108439763,LOC104968126,LOC108278891 coding upstream 416813 30003200 ~ 30057500 (+)
AMCG00011550 nrg2,LOC102784840,LOC100711745,LOC102211978 coding downstream 143349 30636382 ~ 30637300 (+)
AMCG00011552 NA coding downstream 703833 31196866 ~ 31203698 (+)
AMCG00011555 NA coding downstream 1108474 31601507 ~ 31602428 (+)
AMCG00011556 NA coding downstream 1177112 31670145 ~ 31709275 (+)
AMCG00011562 LOC102778048,LOC104948140 coding downstream 1816533 32309566 ~ 32423292 (+)
G107909 NA non-coding upstream 25667 30405410 ~ 30448646 (+)
G107857 NA non-coding upstream 303933 30170001 ~ 30170380 (+)
G107817 NA non-coding upstream 480044 29986595 ~ 29994269 (+)
G107781 NA non-coding upstream 641431 29831459 ~ 29832882 (+)
G107774 NA non-coding upstream 666956 29807090 ~ 29807357 (+)
G107937 NA non-coding downstream 324 30493357 ~ 30493741 (+)
G107962 NA non-coding downstream 183592 30676625 ~ 30676996 (+)
G107971 NA non-coding downstream 409584 30902617 ~ 30902827 (+)
G107987 NA non-coding downstream 726282 31219315 ~ 31219537 (+)
G108023 NA non-coding downstream 1052281 31545314 ~ 31545605 (+)
G107858 NA other upstream 262223 30171788 ~ 30212090 (+)
G107784 NA other upstream 598837 29857970 ~ 29875476 (+)
G107741 NA other upstream 774894 29697601 ~ 29699419 (+)
AMCG00011519 NA other upstream 1597958 28869142 ~ 28876355 (+)
G107394 NA other upstream 2746446 27712206 ~ 27727867 (+)
AMCG00011551 NA other downstream 490946 30983979 ~ 31173789 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 1609840 32102873 ~ 32204915 (+)

Expression


Co-expression Network