G108032 (LOC107575789,LOC100846954)


Basic Information

Item Value
gene id G108032
gene name LOC107575789,LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 31575593 ~ 31575893 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135072
cactcattaacatgcaaatcaatttataacttttttgaaatgcatttttctggatttctggaatacccatccatgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgatggtacatggcctcgtccatcgtccctttgatacggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacagtggggatggtgttcttggggtcataggcagcattcctcctctTCCAAACACgacgagttgagttgatg

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135072 True 301 lncRNA 0.46 1 31575593 31575893

Neighbor

gene id symbol gene type direction distance location
AMCG00011552 NA coding upstream 371895 31196866 ~ 31203698 (+)
AMCG00011550 nrg2,LOC102784840,LOC100711745,LOC102211978 coding upstream 938293 30636382 ~ 30637300 (+)
AMCG00011547 NA coding upstream 1131185 30432974 ~ 30444408 (+)
AMCG00011548 NA coding upstream 1314236 30259538 ~ 30261357 (+)
AMCG00011545 NA coding upstream 1332374 30237315 ~ 30243219 (+)
AMCG00011555 NA coding downstream 25614 31601507 ~ 31602428 (+)
AMCG00011556 NA coding downstream 94252 31670145 ~ 31709275 (+)
AMCG00011562 LOC102778048,LOC104948140 coding downstream 733673 32309566 ~ 32423292 (+)
AMCG00011564 LOC106563625,LOC105010896,LOC107589094,LOC101168142 coding downstream 856947 32432840 ~ 32436433 (+)
AMCG00011565 LOC104948140,LOC103368254,LOC104924602 coding downstream 873611 32449504 ~ 32451892 (+)
G108025 NA non-coding upstream 13136 31562165 ~ 31562457 (+)
G108023 NA non-coding upstream 29988 31545314 ~ 31545605 (+)
G107987 NA non-coding upstream 356056 31219315 ~ 31219537 (+)
G107971 NA non-coding upstream 672766 30902617 ~ 30902827 (+)
G107962 NA non-coding upstream 898597 30676625 ~ 30676996 (+)
G108035 NA non-coding downstream 22737 31598630 ~ 31598902 (+)
G108056 NA non-coding downstream 70704 31646597 ~ 31674103 (+)
G108067 NA non-coding downstream 218245 31794138 ~ 31794386 (+)
AMCG00011551 NA other upstream 401804 30983979 ~ 31173789 (+)
G107858 NA other upstream 1363503 30171788 ~ 30212090 (+)
G107784 NA other upstream 1700117 29857970 ~ 29875476 (+)
G107741 NA other upstream 1876174 29697601 ~ 29699419 (+)
AMCG00011519 NA other upstream 2699238 28869142 ~ 28876355 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 526980 32102873 ~ 32204915 (+)

Expression


Co-expression Network