XLOC_006075 (vstm4a)


Basic Information

Item Value
gene id XLOC_006075
gene name vstm4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30951155 ~ 30967784 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011992
ACTGTTTCAGATTACACACACAGTGAGAGgaagaaaagagaaagaaaaggagAGAAAATCCCTGGGACTCCTTTCTTTTCTTGACGATTAGTTGGGTTTATGGAGCCTACGGGTCTGCAAAATGAAGCTCTCCGCTGTTGCGATAGTTCTCCTGACTAGAGTATTTATTGGAGAGCTGAGTGATGCTTTAAATGTGACCGTCACACCTGGCCCAGTCAGCATGTGTATGGAGGGAGACAACATCACTTTGTCCTGCTTAGTGTCTCAGAAGAAGAGAAGCAGCAGTGTTTTAGTTCTGCGCTGGCTCTACTTCCCCACCCCTGAAGACGAGCATCTTGTGGTGAGGATGGGCATGAAGAAAGCCAAGTATTATGGCAACTACAGCAAGCTCTTTCCTCAGACCAAGTTTCTCCTTTGGGAAGAAAATGATGGGCAGCTCTACCGTCTGCTGATCAAAAATGTGTCACGGGAGGATGGGGGAAACTACACCTGTAAAGTGCAGGAAATACGGAAACACAGAAACAAATGGAGGGCCTCGTCCAATGGAACAGGGAGCATGGAATTACGAGTACATCATACGCCGAGCACAGGAAAAACTGATGTCATATGGCGCATGTTTGAAGATTTGTATCTGTGTGCTGTGCTTATCTGCTCTATTGGTCTGGTCTGTATGCTTGTCTTTGCCCTGACTATCACATGTCAGCATCTGCAGCACAAACGGAGACTACGAGCCAGCTATAACCTGGTGAAGTGTCCAGAAAACAGCTCAGGAGAGACAGTAACCAGTGTGTCCAGCTGCTCTCCTGCAATGCACAGAAAAGAGAAACGACACAAAGCACAGCCCAGAGACGTCACTGAACCACCGCCACCACCACAGATACCAGCTAAAGCACCTGCACCAAGAAAACCACGCAGAACCAAACTTTTAAAGGCACAACCTACAAAAACGTCAAGGGTTTTAGAGGACAGTCTGACATATGCAGAGCTGGAGCTGGTGAAACCCAAGCCTGTGCTTAAAACAGACATGACTGGATGTGCACAACTTGAGCCTAAAACACACTGCACCGGGACTGTGTATGCCCAAATACTCTTTGTGGAGAAGCAagtgtaaatatgtatattaaactgaaattatttatgagattgtttttatattttgtaccTACAGTACATACTGGATGTGTTAGGTATGCCACGTGTACTAGTTTACTAGTATAAAATCCTTAATACAACAGtagcattttcttttattatgtaTTTGGGCACATTATTGTACCTATGCATTTGAtactttttttataagaaaaaataaaatggtgGATTTGAATCCAAACATGAACCATTTGATTAtgcaatttttttgaaaaatgtaacagttttattttttgctgttgtaTGAAATAAAGATTAATCCTCTAAAATCAGAGGACGATTCAGTATGAGCAAAA
>TCONS_00011993
GTCTGCAAAATGAAGCTCTCCGCTGTTGCGATAGTTCTCCTGACTAGAGTATTTATTGGAGAGCTGAGTGATGCTTTAAATGTGACCGTCACACCTGGCCCAGTCAGCATGTGTATGGAGGGAGACAACATCACTTTGTCCTGCTTAGTGTCTCAGAAGAAGAGAAGCAGCAGTGTTTTAGTTCTGCGCTGGCTCTACTTCCCCACCCCTGAAGACGAGCATCTTGTGGTGAGGATGGGCATGAAGAAAGCCAAGTATTATGGCAACTACAGCAAGCTCTTTCCTCAGACCAAGTTTCTCCTTTGGGAAGAAAATGATGGGCAGCTCTACCGTCTGCTGATCAAAAATGTGTCACGGGAGGATGGGGGAAACTACACCTGTAAAGTGCAGGAAATACGGAAACACAGAAACAAATGGAGGGCCTCGTCCAATGGAACAGGGAGCATGGAATTACGAGGTAAAGAAGAATATTTTCCTGAGCTGTATCTTAAGTGAATTAATGACTTATATTGTCTTAACTTATattgtctaaaatatttttttcttctgttgatttAACAAATCCTCTGTGTTGATGTTAGCTTTAACATgcattatatatataatctcaaaacataaatcacaCGTTGAATTGCTAGCTTCACCACAAAAGTTTTGATAATTGACAAATCTACGATCTTGGTATATTTGCTAATCTAACATTGTGGCTTCATAGTTTTAATAGCAGATGAAAGCAAACTACTGCATACTATACATTCAATCCTAATGTGTTTAATTACAACATATTTAATCATACTACAGAACAAGCAGCCTTCAAACTATGCCCCATGTGGTAGTGTGCGCAAACAAAGGATGTAACACATGCACACTAGACACTTTCATCCTTATCCAGTGGCTGCGCTACTGCTCTGCAGAAATTATGATCAATGCAAATGCTCTACAGATATTTTAGGATATTTATTACTCTCACCCAAGTGAGTGTCAATACACTCTTAAAATACAGGTTCCATACTGGCAGAAATGGCTCCATGAAGAACTTTACAATTCAAACCTTTTATACCACAAAAGCTATTTGTAGTGGAAAAAGTCTtaggtttttaaaatgttattcataTTAAGAAAAAAAGGTCTGTGGGCAACCCAAAAAGTTTCTTATTTGGCATCACTGCCAGTTCTATACTGTCCCCTTtttgaaacctttatttttaaatggaGTACAGGCATCTGTTGTTTTTGTATCTATTACTTCCATCTTTTGTGGAATGGTTGTGCAAAAAGTGGGGCTGCTTATATGAAGCATGCACATCTTACAATATTTGACAATATTTACATCACACACATGCTACGCAAAGCTAATGCATGCTTTTC
>TCONS_00011994
GTCTGCAAAATGAAGCTCTCCGCTGTTGCGATAGTTCTCCTGACTAGAGTATTTATTGGAGAGCTGAGTGATGCTTTAAATGTGACCGTCACACCTGGCCCAGTCAGCATGTGTATGGAGGGAGACAACATCACTTTGTCCTGCTTAGTGTCTCAGAAGAAGAGAAGCAGCAGTGTTTTAGTTCTGCGCTGGCTCTACTTCCCCACCCCTGAAGACGAGCATCTTGTGGTGAGGATGGGCATGAAGAAAGCCAAGTATTATGGCAACTACAGCAAGCTCTTTCCTCAGACCAAGTTTCTCCTTTGGGAAGAAAATGATGGGCAGCTCTACCGTCTGCTGATCAAAAATGTGTCACGGGAGGATGGGGGAAACTACACCTGTAAAGTGCAGGAAATACGGAAACACAGAAACAAATGGAGGGCCTCGTCCAATGGAACAGGGAGCATGGAATTACGAGGTAAAGAAGAATATTTTCCTGAGCTGTATCTTAAGTGAATTAATGACTTATATTGTCTTAACTTATattgtctaaaatatttttttcttctgttgatttAACAAATCCTCTGTGTTGATGTTAGCTTTAACATGTTAGCCATAAGCTCCTAAAATCCTGGTttgcattataaatatatatatatatatatatatatatatatatatactgtatgcattatatatataatctcaaaacataaatcacaCGTTGAATTGCTAGCTTCACCACAAAAGTTTTGATAATTGACAAATCTACGATCTTGGTATATTTGCTAATCTAACATTGTGGCTTCATAGTTTTAATAGCAGATGAAAGCAAACTACTGCATACTATACATTCAATCCTAATGTGTTTAATTACAACATATTTAATCATACTACAGAACAAGCAGCCTTCAAACTATGCCCCATGTGGTAGTGTGCGCAAACAAAGGATGTAACACATGCACACTAGACACTTTCATCCTTATCCAGTGGCTGCGCTACTGCTCTGCAGAAATTATGATCAATGCAAATGCTCTACAGATATTTTAGGATATTTATTACTCTCACCCAAGTGAGTGTCAATACACTCTTAAAATACAGGTTCCATACTGGCAGAAATGGCTCCATGAAGAACTTTACAATTCAAACCTTTTATACCACAAAAGCTATTTGTAGTGGAAAAAGTCTtaggtttttaaaatgttattcataTTAAGAAAAAAAGGTCTGTGGGCAACCCAAAAAGTTTCTTATTTGGCATCACTGCCAGTTCTATACTGTCCCCTTtttgaaacctttatttttaaatggaGTACAGGCATCTGTTGTTTTTGTATCTATTACTTCCATCTTTTGTGGAATGGTTGTGCAAAAAGTGGGGCTGCTTATATGAAGCATGCACATCTTACAATATTTGACAATATTTACATCACACACATGCTACGCAAAGCTAATGCATGCTTTTCAGA

Function

symbol description
vstm4a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-69 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4).

Ensembl:

ensembl_id ENSDARG00000010154

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011992 False 1448 mRNA 0.42 8 30951155 30967784
TCONS_00011993 False 1368 mRNA 0.38 3 30951267 30955035
TCONS_00011994 True 1451 lncRNA 0.37 2 30951267 30955038

Neighbor

gene id symbol gene type direction distance location
XLOC_006074 NA coding upstream 22494 30920554 ~ 30928661 (+)
XLOC_006073 drgx coding upstream 30890 30912117 ~ 30920265 (+)
XLOC_006072 ercc6 coding upstream 41139 30874153 ~ 30910016 (+)
XLOC_006071 CR762493.1 coding upstream 114379 30836656 ~ 30836776 (+)
XLOC_006070 cxcl12a coding upstream 131440 30804367 ~ 30819715 (+)
XLOC_006076 lrrc18a coding downstream 34874 31002658 ~ 31005889 (+)
XLOC_006077 si:ch211-223a10.1 coding downstream 102397 31070181 ~ 31090040 (+)
XLOC_006078 arhgap22 coding downstream 140550 31108334 ~ 31139766 (+)
XLOC_006079 CR931802.4 coding downstream 176521 31144305 ~ 31191814 (+)
XLOC_006080 CR931802.3 coding downstream 205049 31172833 ~ 31175154 (+)
XLOC_006067 NA non-coding upstream 273512 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 439432 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 699298 30251741 ~ 30251857 (+)
XLOC_006101 NA non-coding downstream 838736 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 987436 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 1137481 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 1424599 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1878709 32846493 ~ 32846609 (+)

Expression


Co-expression Network