AMCG00011582


Basic Information

Item Value
gene id AMCG00011582
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 262391 ~ 268054 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011582
GCACTGTCTTCTGTGCAGCGCCGCCTGTGCTCTGCTGCGCACTGCACTGCGTCTGCGCAGGCCGTGACGTCACACGCGGCCTCCCGTCTGCAGTCTATCCGGCAGAAACGTGTCGTGATCGCGGCTGAAACGCGCTCCCCGCAGCCGCCAGTGGGTCAGTCCGCCAGTGGGTCAGTCCGCCAGTGGGTCAGTCCGCCAGTGGGTCGGCCTGTGCAGCGGACACCACAGCGAGACCAGCGCCCACTCCCACCCTGAGCACCGCGGCCTGAACGCCGTCCTGCTCTACTTGGTTTGTCCGCAGCGCCGACCCGTAGTCCGAATGTTTTCCAAGATGGGGGAGAAGAAGACGTCGGCGCGCTCCCAGGAGGCCAGCCAGCGCCGGATCCTGGACCGGGCCACCCGGCAGCGCCGCCTGAACCGCCAGCTGGAGGCGCTGGAGAAGGACAACTTCCAGGACGACCCGCACGCCAGCCTGCCCCAGCTGGCCAAGCGCCTGCCCCAGTTCGACGACAGCAACGAGTCCGGTGAGGGGGGACTGGGCTACACGTGTGTGTCGTGTGGGGCGCGGTACTGCTGCGTGCGCTGCCTGGGGACGCACCACGAGACGCGGTGTCTGAAGTGGACCTTGTGaccccctctctgtgtctctgtgtggcCCCCGCGTTCCAGGTGCAGTTGTTTCGTGTCTGTTTGCTCGGCGGCTCTTTTCACAGGACGTGTCTGTCAGTGTTGATTTTGCAGTGAAATAAAGGCCCCCGTGTGACTATT

Function

GO: NA

KEGG:

id description
K11663 ZNHIT1, VPS71; zinc finger HIT domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011582 True 768 mRNA 0.65 4 262391 268054

Neighbor

gene id symbol gene type direction distance location
AMCG00011583 NA coding downstream 1800 254881 ~ 260591 (-)
AMCG00011577 dlg4,LOC106603100 coding downstream 104995 145423 ~ 157396 (-)
AMCG00011578 LOC106593277,LOC105009281,LOC105904571,LOC105010828,LOC108414382,LOC107752256 coding downstream 123934 122359 ~ 138457 (-)
AMCG00011574 psmb6,LOC105010830,LOC106603098 coding downstream 193608 65577 ~ 68783 (-)
AMCG00011573 NA coding downstream 198560 58725 ~ 63831 (-)
AMCG00011584 NA coding upstream 12877 280931 ~ 282141 (-)
AMCG00011588 NA coding upstream 45965 314019 ~ 320628 (-)
AMCG00011590 NA coding upstream 105310 373364 ~ 374190 (-)
AMCG00011594 NA coding upstream 345086 613140 ~ 619539 (-)
AMCG00011595 NA coding upstream 387366 655420 ~ 656305 (-)
G131152 NA non-coding downstream 164562 96783 ~ 97829 (-)
G131149 NA non-coding downstream 197162 64893 ~ 65229 (-)
G131114 NA non-coding downstream 202294 53722 ~ 60097 (-)
G131244 NA non-coding upstream 92176 360230 ~ 360603 (-)
G131425 NA non-coding upstream 191456 459510 ~ 755699 (-)
G131426 NA non-coding upstream 193356 461410 ~ 462697 (-)
G131428 NA non-coding upstream 281985 550039 ~ 560333 (-)
G131437 NA non-coding upstream 359277 627331 ~ 630425 (-)
AMCG00011579 NA other downstream 49829 165892 ~ 212562 (-)
AMCG00011589 LOC100196315,LOC108414592,LOC106511660 other upstream 25398 293452 ~ 303915 (-)
G131420 NA other upstream 146463 414517 ~ 415154 (-)
G131456 NA other upstream 397323 665377 ~ 667310 (-)
AMCG00011597 mink1,LOC103395422,LOC107746403,LOC107596107 other upstream 431764 699818 ~ 720407 (-)
AMCG00011601 NA other upstream 521954 790008 ~ 810157 (-)

Expression


Co-expression Network