AMCG00011597 (mink1,LOC103395422,LOC107746403,LOC107596107)


Basic Information

Item Value
gene id AMCG00011597
gene name mink1,LOC103395422,LOC107746403,LOC107596107
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 699818 ~ 720407 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011597
gagagagagagagagagagagagatctgccGCACTGAACTAGCACAAAGTAGCGACTTAGTTTGTCCCTGTTGCATTACCGTAGTAGCTGGGCTATCCAGGAAGAAgcgaggggggagagagagagaaagcgagagagggagggagtcaGACAGATACAGCGGCAGTGCTTGTGTCGAGCGAGAGACGTCGGAAACAGACCTAcgcaacagacagacagacagacagagagagaaggacggGCGGACAGACAGCGGGACGGGACGATGCGCAGTTGCGAGGCGCTCGGGTTGTGCAGATAACGACGCTGGATTATTCTGTGCTGTGGACtgcgggggagagagagagagagagaaagtgcaaCACTCGCACCTACACGGGATTGAAAACCGATACATTGTTTgggcgttttgtttttttgtaactgttaaaaaaacaaccgcAGAACCCCAACGAGCCGAATCGCTGTGTGACGTCACAGCGGCCAACTTGCCCCGCCGAGCTCCGGTCCGGCAGAGATCGCATCACGTCACGGCTCGGCGATTAAAAACTTTGCGAGCTTTTGCATGACGTCAGCGCACTTGTCCGTGGGTCCGGGCGGGCAGGTCTCTTCCGTGTGTCGATTATATAACGAGACTGTTGCTACCGATAGTCGATGCGGGTGTTGACTTCATAACCATAACGAGAGCACATATTACAGTGGGGGCTAATTGCggctgattgattgattgattggttacGTAATTGCTGGTGTCTGCGGGTGCCAGGAACGCCAGGATGTCCAAACGGCGCCCCGTCCCCGTTGCCCCGCTCTCCTTAATAACGCGCACTACGTTATATTATTGAAGAATTGCGTtggtttttttaattacaattaatcagTTACTGTCTGACCGGGACCCAGCCTGGAGCAGCGGGGGTCGCCACCCACAATAATAAACGCAATTTTctgaaggggtggggggtgttatTATTGCATTGACTGTATGAGATCTGACGGACGCAGCTTGGGCATTATGAGTGTGTAGGTGAGCAGCCAGTGTCCACCAACCTGGAGCAGAAGGACGTGGATTGattgtctattttatttattttttggttgtttttattttgaatatatttgccATCCAAAATGTCTGAAAACGCCCCCACGCGAAGTCTGGATGACATCGACCTGGGCGCCTTACGGgaagaggaggaggagatcaAGCAGGAGATCAACATGCTGAAGAAGTACAGCCACCACCGCAACATCGCCACCTACTATGGCGCCTTCATCAAGAAGTCGCCCCCCGGACACGATGACCAGCTCTGGGTCATCGCCTGCGATGAGAACCCCGACTCCACCTACGACTACAGGGTACGGTGGGTTTtaactccccctctctctgctgcaTCCAGAATTACCCCCCCTCTGCTGTGTCCAgtattaacccctctctctctctctctgcagagtGATATCTGGTCTCTGGGGATCACTGCCATAGAGATGGCTGAGGGAGCGCCACcaCTGTGTGACATGCACCCCATGAGAGCTCTGTTCCTGATCCCGCGCAACCCTCCTCCCAAGCTGAAGTCCAAGAAATGGTCCAAGAAGTTCCTGGACTTCATCGAGAGCTGCCTGATCAAGACCTACACCAGCCGGCCATCCACCGAGCAGCTGCTGAAGCACGCCTTCATCCGGGACCAGCCCACCGAGCGGCAGAACCGCGGAGACGAACGCGAGTCCAGCTCCATCCTGAACGTGCCGGGCGAGTCCACGCTGCGGAGAGACTTCCTGCGGCTGCAGCAGGAGAACAAGGAGCGCTCGGAGGCGCTGCGGAGACAGCAGGCCCAGCTGGCCGCCCAGCGCCGCGACCCGGAGGAGCACAAGAGGCAGCTGCTGCATGACCGGCAGAAGCGCATCGAGGAGCAGAAGGAGCAGCGGCGCCGCCTGGAGGAGcaacAGCGCCAGGAGCGGGAGATGGGCAAGCAGCAGGATAAGGGTCCGCACCGGCGGCTGGAGGAGCTGCGGCGTGAGGAGGACCGCCGGCTGGCTGAGAGAGAGCAGGAGTTCATAAGGCACaagctggaggaggagcagcgCCAGTTAGAAatcctccagcagcagctgctgcaggaacAGGCTCTGCTCATGGAGTACAAGCGCAAGCAGCTGGAGGAGCAGCGCCAGTCAGAGCGTCTGCAGAGGCAGCTCCAGCAGGAACACGCCTACCTGGTCTCcctgcagcaacagcagcagcagcagcaacagcagcagcagcaacagcagcagcagcagcagcagctggacaAGAAGCCACAGCTCTACCACTACAGCAAGGGCCTGGAGCCCAACAACAAGCCCGCCTGGGCCCGAGAGgtgGAGGAGCGCTCTAAGCTGAACCGGCAGAGTTCACCCAAGATGGGCACCACCGTGTCGGACCCGTCCCTCCAGTCGCGCTCCGACTCCATCAGCCAATCGGGCACCTCGCAGGCCGCGCAGACTCCACCCATGCAGCGGCCCGTCGAACCGCAGGGCGGCCAGAGCAAGGACCCCTCCCCAGGCCCCTCCCCCGGTCCCGCCCCCCGTGCCCTCCCCGGCAGGGAGCTGgtacCCCAGCGGACGACCTCCATCGCCGCAGCCCTGAACACCAACCTGTCGTCCGGCATCCGCCACCCTGTCCGCGCCAGTAACCCGGACCTGCGCAGGAACGAGGGATGGGACAGAGGGGACAGTCTGAGCTCGGTGTCTAACCTGCCGCAGACCGGCTCCCTGGAGAGACACCGCATCATCGATCGACAGCTCGCCCCTCCTGCCTGGGGAGGGACGTCAAAAGGCGGGGGAATCTCGCACGGCATCCCGGCCCAGCCGCCCCGCGACCGGGGCGAGGaagccccccggccccccgcCAAGGCCCTGGACTACTCCTCCTCCAGCGAGGAGAGCGAGAGTAGCGAGGAGAGCGAcagtggagggagggaggaggaagatgatAGCCCCACAGACcgaGTGAGGGATCCAGACTCCGACTCGGTGAACACCATGGTCGTCCACGACGAGGAAGGGGAGGAGTCGGGCGTCGACACCACGACCGGCAGCTATGGGGACCAGACCATGGTGGTGCAGAGGACCTCCGAGGAGAAGCGCAATCACAACGGCTACACAAACCTGCCGGACGTCTATCAGTCGAGGGGATTGGTCAAGGCTCCAGGCAAGGCTTCCTTCACGACCTTTGTTAACCTCGGGATGTACCAACAGCCGGGCGGGCCGGGGGATTCCATCTCTGTGGCGGGGTTCGGGGGCGAGGGATCCCGGTTCGAGCAGCTCAAGCTGGAAGTGCGCAAGGGCTCGGTGGTGAACATGGATGTGCTGGAGGGGCTCAACCTGCTCATCACCATCTCCGGGAAGAAGAACAAGCTGCGGtctttTGCTGACCTGCCCCACAAACCCCAGCTGGTTGACCTCACGGTGGAAGAGGGTCAGAGGTTAAAGGTCATCTATGGGTCTAGCGCTGGGTTCCACGCCATCGACGTCGACTCGGGAAACAACTACGACATCTACATCCCTGTGCATATCCAGAGCCAGGTGACACCCCATGCCGTGGTCTTCCTGCCCAGCTCCGAGGGCATGGAGATGCTGCTGTGCTATGAGGACGAGGGTGTCTATGTCAACACCTACGGGCGCATCATCAAGGACGTGGTGCTGCAGTGGGGCGAGATGCCCACCTCCGTCGcgtaTATCTGCTCCAATCAGATCATGGGTTGGGGTGAGAAGGCGATTGAGATCCGCTCGGTGGAGACGGGGCACCTGGATGGGGGCAGGGCGGCGGCATCTCCCTGCCAGGGCCAGAACCCCATTCCTGAGGTCGGTTTCGACCCGTTGACCGGGGGTTCTGGGTCTCCTGCTGGGTTTGTAGGTCAGACCCACGGGCAGAACGACAAACTGTGTATCCCGATGCCAGAGAGCCAATCGGAGAAATAA
>TU164834
gaaagcgagagagggagggagtcaGACAGATACAGCGGCAGTGCTTGTGTCGAGCGAGAGACGTCGGAAACAGACCTAcgcaacagacagacagacagacagagagagaaggacggGCGGACAGACAGCGGGACGGGACGATGCGCAGTTGCGAGGCGCTCGGGTTGTGCAGATAACGACGCTGGATTATTCTGTGCTGTGGACtgcgggggagagagagagagagagaaagtgcaaCACTCGCACCTACACGGGATTGAAAACCGATACATTGTTTgggcgttttgtttttttgtaactgttaaaaaaacaaccgcAGAACCCCAACGAGCCGAATCGCTGTGTGACGTCACAGCGGCCAACTTGCCCCGCCGAGCTCCGGTCCGGCAGAGATCGCATCACGTCACGGCTCGGCGATTAAAAACTTTGCGAGCTTTTGCATGACGTCAGCGCACTTGTCCGTGGGTCCGGGCGGGCAGGTCTCTTCCGTGTGTCGATTATATAACGAGACTGTTGCTACCGATAGTCGATGCGGGTGTTGACTTCATAACCATAACGAGAGCACATATTACAGTGGGGGCTAATTGCggctgattgattgattgattggttacGTAATTGCTGGTGTCTGCGGGTGCCAGGAACGCCAGGATGTCCAAACGGCGCCCCGTCCCCGTTGCCCCGCTCTCCTTAATAACGCGCACTACGTTATATTATTGAAGAATTGCGTtggtttttttaattacaattaatcagTTACTGTCTGACCGGGACCCAGCCTGGAGCAGCGGGGGTCGCCACCCACAATAATAAACGCAATTTTctgaaggggtggggggtgttatTATTGCATTGACTGTATGAGATCTGACGGACGCAGCTTGGGCATTATGAGTGTGTAGGTGAGCAGCCAGTGTCCACCAACCTGGAGCAGAAGGACGTGGATTGattgtctattttatttattttttggttgtttttattttgaatatatttgccATCCAAAATGTCTGAAAACGCCCCCACGCGAAGTCTGGATGACATCGACCTGGGCGCCTTACGGGACCCGGCTGGGATCTTCGAGCTAGTGGAGGTGGTGGGAAATGGCACCTATGGACAAGTGTACAAGGGCCGCCACGTGAAGACCGGCCAGCTGGCGGCCATCAAGCTGATGGATGTGacggaggaagaggaggaggagatcaAGCAGGAGATCAACATGCTGAAGAAGTACAGCCACCACCGCAACATCGCCACCTACTATGGCGCCTTCATCAAGAAGTCGCCCCCCGGACACGATGACCAGCTCTGG

Function

symbol description
mink1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including MAPK cascade; actin cytoskeleton reorganization; and activation of protein kinase activity. Predicted to be active in cytoplasm. Orthologous to human MINK1 (misshapen like kinase 1).

NR:

description
PREDICTED: misshapen-like kinase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011597 True 3966 mRNA 0.60 27 699818 720407
TU164834 False 1312 TUCP 0.53 3 713148 720282

Neighbor

gene id symbol gene type direction distance location
AMCG00011599 NA coding downstream 8810 687131 ~ 691008 (-)
AMCG00011595 NA coding downstream 43513 655420 ~ 656305 (-)
AMCG00011594 NA coding downstream 80279 613140 ~ 619539 (-)
AMCG00011590 NA coding downstream 325628 373364 ~ 374190 (-)
AMCG00011588 NA coding downstream 379190 314019 ~ 320628 (-)
AMCG00011598 NA coding upstream 2677 723084 ~ 731850 (-)
AMCG00011602 NA coding upstream 239699 960106 ~ 965129 (-)
AMCG00011611 NA coding upstream 432019 1152426 ~ 1154789 (-)
AMCG00011608 NA coding upstream 444361 1164768 ~ 1176860 (-)
AMCG00011610 NA coding upstream 458393 1178800 ~ 1180631 (-)
G131460 NA non-coding downstream 1430 693932 ~ 698388 (-)
G131437 NA non-coding downstream 69393 627331 ~ 630425 (-)
G131428 NA non-coding downstream 139485 550039 ~ 560333 (-)
G131426 NA non-coding downstream 237121 461410 ~ 462697 (-)
G131244 NA non-coding downstream 339215 360230 ~ 360603 (-)
G131471 NA non-coding upstream 53770 774177 ~ 837898 (-)
G131477 NA non-coding upstream 127663 848070 ~ 854045 (-)
G131475 NA non-coding upstream 169876 890283 ~ 943901 (-)
G131507 NA non-coding upstream 374622 1095029 ~ 1176142 (-)
G131508 NA non-coding upstream 376863 1097270 ~ 1098796 (-)
G131456 NA other downstream 32508 665377 ~ 667310 (-)
G131420 NA other downstream 284664 414517 ~ 415154 (-)
AMCG00011589 LOC100196315,LOC108414592,LOC106511660 other downstream 395903 293452 ~ 303915 (-)
AMCG00011579 NA other downstream 487256 165892 ~ 212562 (-)
AMCG00011601 NA other upstream 69601 790008 ~ 810157 (-)
AMCG00011603 NA other upstream 278584 998991 ~ 1006137 (-)
AMCG00011640 NA other upstream 965902 1686309 ~ 1704999 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other upstream 987310 1707717 ~ 1719226 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other upstream 1129492 1849899 ~ 1864772 (-)

Expression


Co-expression Network