AMCG00011603


Basic Information

Item Value
gene id AMCG00011603
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 998991 ~ 1006137 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011603
ATGGATATTTTCTCTGTTCTGGAGACCAACATCGTTTCAGTCGTGATGGGCTTCTTgtgcatcattttgtttttgaagaatcGGGGTAAACAGAATTTACACAGCAGGCTGCCGCCTGGTCCTTCTCCTTTGCCCATCGTTGGGAACTTGTTTCAGATGGACGTGAAACAGCCCTACAAGTTTTTTCTGGAGCCAGTGGTGATTCTCTCCGGTTATGAAACCATCAAAGATGCCTTGGTGAGCCAGGGGGAAGAATTTAGCGGTAGGGCCAACTTCCCTATTCTGATGAAGGTCACCAGAGGTTATGGGTTGCTGGCAAGCAGTGGAACAAGTTGGAGGGACCTCAGGAGATTCTCGATCACAACTCTGAAGAACTTTGGCATGGGGCGGCAGAGTCTGGCAGAAAGGATCCAAGATGAAGCCAAGAATCTGATTGAAGCTTTTAGGAAACATGGAGGCATTGCGGTCTCCAATGTAATTTACTCCATTGTCTTTGGCCAGAGGCTAGACTACGACGACAAACAGTTAAAGTTTCTCTTGAATGTCATTGACCACTATTTCAGATTCCTGAGCAGCTCCAAAGGACTGATCTACAACATGTTTCCATGGGTTTGCCAGCACCTCCCAGGTCCACATCACCAGGTGTTTGAAGGGTTCAGGAAACTCCAGGAGTATGTGGAAAAAGAGGAGAAAGGCCAACCTCACAGCTCGTTTGTCTACGAGAACCTGGTGACCAGCGTGTGGAGTCTTTTCTCAGCAGGAACGCAAACCACCTCATCCACAGTGAGACACAGCCTGCTGCTCATGCAGAAATATCCTCATGATACGATGGTCCTTCCTCTTCTGTCCTCCGTGCTGTCCGGCCCCAAGCTGTGGAAGAACCCACACACCTTTGACCCCGGAAACTTTCTGGCTGAGGATGGAAGCTTTAAGAAAGCAGATGCTTTCTTGCCCTTCGGACTG
>TU164890
CTACAACATGTTTCCATGGGTTTGCCAGCACCTCCCAGGTCCACATCACCAGGTGTTTGAAGGGTTCAGGAAACTCCAGGAGTATGTGGAAAAAGAGGTTGATCGACGACTGGAAAATCTTGACAGAGAGACACCAAGAGACTACATTGAAGCTTTCCTCGTTAGAATGGAAGAGGAGAAAGGCCAACCTCACAGCTCGTTTGTCTA

Function

GO:

id name namespace
GO:0043227 membrane-bounded organelle cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011603 True 963 mRNA 0.49 7 998991 1006137
TU164890 False 207 lncRNA 0.47 2 999913 1000485

Neighbor

gene id symbol gene type direction distance location
AMCG00011602 NA coding downstream 33862 960106 ~ 965129 (-)
AMCG00011598 NA coding downstream 267141 723084 ~ 731850 (-)
AMCG00011599 NA coding downstream 307983 687131 ~ 691008 (-)
AMCG00011595 NA coding downstream 342686 655420 ~ 656305 (-)
AMCG00011594 NA coding downstream 379452 613140 ~ 619539 (-)
AMCG00011611 NA coding upstream 146289 1152426 ~ 1154789 (-)
AMCG00011608 NA coding upstream 158631 1164768 ~ 1176860 (-)
AMCG00011610 NA coding upstream 172663 1178800 ~ 1180631 (-)
AMCG00011609 NA coding upstream 174881 1181018 ~ 1184531 (-)
AMCG00011614 NA coding upstream 188762 1194899 ~ 1202106 (-)
G131475 NA non-coding downstream 55090 890283 ~ 943901 (-)
G131477 NA non-coding downstream 144946 848070 ~ 854045 (-)
G131471 NA non-coding downstream 161093 774177 ~ 837898 (-)
G131425 NA non-coding downstream 243292 459510 ~ 755699 (-)
G131460 NA non-coding downstream 300603 693932 ~ 698388 (-)
G131507 NA non-coding upstream 88892 1095029 ~ 1176142 (-)
G131508 NA non-coding upstream 91133 1097270 ~ 1098796 (-)
G131546 NA non-coding upstream 389556 1395693 ~ 1396352 (-)
G131604 NA non-coding upstream 599915 1606052 ~ 1606285 (-)
G131615 NA non-coding upstream 625320 1631457 ~ 1631760 (-)
AMCG00011601 NA other downstream 188834 790008 ~ 810157 (-)
AMCG00011597 mink1,LOC103395422,LOC107746403,LOC107596107 other downstream 278584 699818 ~ 720407 (-)
G131456 NA other downstream 331681 665377 ~ 667310 (-)
G131420 NA other downstream 583837 414517 ~ 415154 (-)
AMCG00011589 LOC100196315,LOC108414592,LOC106511660 other downstream 695076 293452 ~ 303915 (-)
AMCG00011640 NA other upstream 680172 1686309 ~ 1704999 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other upstream 701580 1707717 ~ 1719226 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other upstream 843762 1849899 ~ 1864772 (-)
G131863 NA other upstream 1287496 2293633 ~ 2296453 (-)
G132117 NA other upstream 1454970 2461107 ~ 2461750 (-)

Expression


Co-expression Network