AMCG00011638 (aurkb,plk4,LOC107704466,LOC107705065,LOC100706117)


Basic Information

Item Value
gene id AMCG00011638
gene name aurkb,plk4,LOC107704466,LOC107705065,LOC100706117
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 1721697 ~ 1724576 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011638
GTTTACTTCGGTTTCTGTTCTGCAGTTGAACTGGTCCTGATATGAGTGCATTGCAGAATAGAGCTCAAATGACGCGTTTGGGTTAGTAAAGATTAATGTGTCTTTTAGTGGAATTGCACAAAACACATTCCAACGAAAGAAGTGACATCTCAGAGacCGCACAGACAAACGATAAAGAGAATCTGGATCCTAAACCAGTTAGACCACAGTTCACCACGCCCCTGGGGACGATGGGGCCACAGCGCGTGCCGAGGAACCCGGCTGTGGAGAACGGTGACTGCCACACAGTGACGGgcccgAGCAGAGTGGCAGCGGTGGCCAGCTATCGCAGCGCTTGCCCTCCACCCAGCCGGAAGCGCTTCTGCATCAACGACTTCGACATCGGCCGGCCGCTAGGCAAGGGCAAGTTCGGCAACGTGTACCTGGCCCGCGAGCGCAAGCTCAAGTTCATCGTGGCGCTGAAGGTGCTGTTCAAGTCGCAGATCGAGAAGGAGGGCGTGGAGCACCAGCTGCGCCGGGAGATCGAGATCCAGTCCCACCTCAGGCACCCCAACATCCTGCGCTTCTACCAGTACTTCCACGACCGCACGCGTGTCTATCTGGTGCTGGAGTACGCCCCCCAGGGAGAGATGTACAAGCAGTTGCAGCGCTGCGGCCGCTTCGACGACCAGCGCACCGCCACGTACATGGAGGAGCTGGCGGACGCGCTGCTGTACTGCCACGAGCGCAAGGTCATCCACCGCGACATCAAGCCCGAGAACCTGCTGCTGGGCTTCCGGGGCGAGCTGAAGATCGCCGACTTCGGCTGGTCCGTCCACGCGCCCTCCCTCAGgcGGCGGACCATGTGCGGCACGCTGGACTACCTGCCCCCGGAGATGATCGAGGGGCGCACGCACGATGAGAAGGTGGACCTGTGGTGCATCGGGGTGCTGTGCTACGAGTGCCTGGTAGGGAACCCCCCCTTCGAGACGTCCAGCCACTCAGACACCTACAAGAGGATCACCAAGGTGGACCTGCAGTTCCCCAAGGTGGTGTCGGACGGGGCGCGTGACCTCATCTCCAAGCTGCTCCGGCACAACCCCGCCATGCGGCTGCCCCTGCGCAGCGTCCAGGACCACCCCTGGGTCAAGGCCAACTCCCGGCGTGTGCTGCCGCCCGTCTACACGCCCAAGAAAGTGTGACGGCCGCCTGTCcctcctgtctgtgtctctctctctctctctctctgtctctttcatatatttgttttcctgctgaaggaaattctgtattttaaagtttgttaaatatttagggaaggttattttattaaatggtgtaataaagt

Function

symbol description
aurkb Predicted to enable histone serine kinase activity. Acts upstream of or within chromosome segregation; cytoskeleton-dependent cytokinesis; and microtubule cytoskeleton organization. Predicted to be located in midbody and nucleus. Predicted to be part of chromosome passenger complex. Predicted to be active in spindle microtubule; spindle midzone; and spindle pole centrosome. Is expressed in several structures, including blastomere; midbrain hindbrain boundary; nervous system; and proliferative region. Human ortholog(s) of this gene implicated in spermatogenic failure 5. Orthologous to human AURKB (aurora kinase B) and AURKC (aurora kinase C).
plk4 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within centriole assembly; cilium assembly; and developmental growth. Predicted to be located in centriole; deuterosome; and nucleolus. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in brain; eye; nervous system; and pronephros. Used to study ciliopathy. Human ortholog(s) of this gene implicated in microcephaly and chorioretinopathy 2. Orthologous to human PLK4 (polo like kinase 4).

NR:

description
PREDICTED: aurora kinase B-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K11479 AURKB; aurora kinase B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011638 True 1327 mRNA 0.58 9 1721697 1724576

Neighbor

gene id symbol gene type direction distance location
AMCG00011635 LOC108442099 coding downstream 38165 1673442 ~ 1683532 (-)
AMCG00011634 NA coding downstream 51497 1668896 ~ 1670200 (-)
AMCG00011636 NA coding downstream 125498 1593707 ~ 1596199 (-)
AMCG00011627 NA coding downstream 186052 1529619 ~ 1535645 (-)
AMCG00011628 NA coding downstream 207518 1499357 ~ 1514179 (-)
AMCG00011639 tmem107,LOC106574226 coding upstream 1869 1726445 ~ 1735712 (-)
AMCG00011644 NA coding upstream 13065 1737641 ~ 1740415 (-)
AMCG00011641 NA coding upstream 17512 1742088 ~ 1750534 (-)
AMCG00011643 NA coding upstream 40167 1764743 ~ 1767565 (-)
AMCG00011642 NA coding upstream 43002 1767578 ~ 1772285 (-)
G131633 NA non-coding downstream 53017 1666554 ~ 1668680 (-)
G131625 NA non-coding downstream 78669 1642805 ~ 1643028 (-)
G131615 NA non-coding downstream 89937 1631457 ~ 1631760 (-)
G131604 NA non-coding downstream 115412 1606052 ~ 1606285 (-)
G131546 NA non-coding downstream 325345 1395693 ~ 1396352 (-)
G131691 NA non-coding upstream 50913 1775489 ~ 1845721 (-)
G131709 NA non-coding upstream 142217 1866793 ~ 1879291 (-)
G131741 NA non-coding upstream 176017 1900593 ~ 1915550 (-)
G131751 NA non-coding upstream 222871 1947447 ~ 1948939 (-)
G131756 NA non-coding upstream 275833 2000409 ~ 2002192 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 2471 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 16698 1686309 ~ 1704999 (-)
AMCG00011603 NA other downstream 715560 998991 ~ 1006137 (-)
AMCG00011601 NA other downstream 911540 790008 ~ 810157 (-)
AMCG00011597 mink1,LOC103395422,LOC107746403,LOC107596107 other downstream 1001290 699818 ~ 720407 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other upstream 125323 1849899 ~ 1864772 (-)
G131863 NA other upstream 569057 2293633 ~ 2296453 (-)
G132117 NA other upstream 736531 2461107 ~ 2461750 (-)
G132140 NA other upstream 842169 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 885152 2609728 ~ 2617328 (-)

Expression


Co-expression Network